The following changes allowed the pipeline to be run using:
R: 3.4.4
Perl: 5.26.1
I do not know the implications for setting the default barcode to 0 for the de-duplication R script. The use of NA for the integer type is not allowed in this version of R. With this change the script ran and found some duplicates.
From perl 5.24 the keys and values keywords cannot accept a reference. The argument must be an array or a hash (see perldoc: values).
The following changes allowed the pipeline to be run using:
R: 3.4.4 Perl: 5.26.1
I do not know the implications for setting the default barcode to 0 for the de-duplication R script. The use of NA for the integer type is not allowed in this version of R. With this change the script ran and found some duplicates.
From perl 5.24 the
keysandvalueskeywords cannot accept a reference. The argument must be an array or a hash (see perldoc: values).