Some functions do not do well with tibbles as input, supposedly because the subsetting with df[1:3, 1] and tbl[1:3, 1] does not give the same output. I'll list the functions that appear to have this problem:
inter_intra_TAD.R, res <- res[tad_bed[x, 1] == tad_bed[y, 1]]
Some functions do not do well with tibbles as input, supposedly because the subsetting with df[1:3, 1] and tbl[1:3, 1] does not give the same output. I'll list the functions that appear to have this problem: