search

robinweide / GENOVA

GENome Organisation Visual Analytics
GNU General Public License v3.0
69 stars 15 forks source link

Insulation score visualization problem #307

Closed Moonriver1988 closed 1 year ago

Moonriver1988 commented 2 years ago

Hello,

I am trying to plot the insulation score, and the x scale is incorrect, looks like the insulation score profile is correct, just the coordinates are wrong, the coordinates is around 30Mb larger than the coordinates I provide(e.g. provide "start = 57e6, end = 59e6", but in the plot is 87Mb to 89Mb), I tried to plot the whole chromosome, and the chromosome length is larger than its actual length, also larger around 30Mb. Could you help me with this? Thank you very much!

teunbrand commented 2 years ago

Hi there,

Might this be related to #289, and if so, does it help to install the dev version?

Best, Teun

Moonriver1988 commented 2 years ago

Hello Teun,

Thanks for your reply! I checked #289, but I don't understand what is "the dev version", the dev version is the version on github and installed by "remotes::install_github("robinweide/GENOVA")"? I installed GENOVA in this way, and I am using GENOVA_1.0.0.9000.

teunbrand commented 2 years ago

You can install the dev version using the code below:

remotes::install_github("robinweide/GENOVA", ref = "dev")
Moonriver1988 commented 2 years ago

It works after install dev version. Thank you very much for your help!