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robinweide / GENOVA

GENome Organisation Visual Analytics
GNU General Public License v3.0
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About calling compartment PC1 values #327

Open GleeenSIBS opened 1 year ago

GleeenSIBS commented 1 year ago

Can GENOVA call compartment PC1 values by gene density or GC content? If I don‘t have an activate histone marker (peak file), how can I get PC1 values by GENOVA? Thanks!

teunbrand commented 1 year ago

Yes this is documented in ?sign_compartmentscore. For GC content, you can use a bedgraph and for gene density you can use a bed file of TSSs.