Open Guanchen-Li opened 1 year ago
also run into this issue. using a BED format with V1= chr, V2 = pos1, V3 = pos2. what format should the bed files be in for loops?
any update on this issue? I'm using a loops list generated by Juicer
The loops should be a data.frame with the columns 'chromosome1', 'start1', 'end1', 'chromosome2', 'start2', 'end2'. Or a list of such data.frames. Not sure why the documentation says 'BED-like data.frame', it is confusing.
Dear all, I am using the function hic_matrixplot to compare two hic matrices. And I also want to add the loops info of two samples (called by hiccups) into the plot. Yet, when I add a list of data.frame of loops into function hic_matrixplot, I met an error. So, I want to ask whether this feature has not been covered in this function. Moreover, if I use hic_matrixplot to show one sample's hic matix, the loops features for one sample can do well.
Cheers,
Guanchen