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robinweide / GENOVA

GENome Organisation Visual Analytics
GNU General Public License v3.0
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centromeres setting #342

Open tan5251 opened 7 months ago

tan5251 commented 7 months ago

My species is pig that not annotated with centromeres information. My code is : EDL <- load_contacts(signal_path ='../../hic_files/EDL.juicer.1.0.hic',resolution = 50000,sample_name = "EDL",balancing = "T",colour = "black",centromeres = FALSE) error: Error in names(object) <- nm : 'names' attribute [3] must be the same length as the vector [1]

But EDL <- load_contacts(signal_path ='../../hic_files/EDL.juicer.1.0.hic',resolution = 50000,sample_name = "EDL",balancing = "T",colour = "black") it can works.

Any suggestions? Thanks!

Miracle-Yao commented 5 months ago

Hi, @tan5251

Did you solve the problem in the end? Adding centromeres = FALSE:

'names' attribute [3] must be the same length as the vector [1]