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robinweide / GENOVA

GENome Organisation Visual Analytics
GNU General Public License v3.0
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compartment strength score #358

Open IcyYeyangchen opened 1 month ago

IcyYeyangchen commented 1 month ago

Hi,thx for your tools!

I used your tool to analysis compartment strength score per arm, but in the results , it missed some arms , like chr13p , chr14p , I looked up the eigenvector results calculated by cooltools. its shows empty in that region too. I just wonder why this happened. image

I also checked your example file WT and WAPL. The results in these region are also empty. I am curious about whether something special in these region? image

teunbrand commented 1 month ago

Likely, these are acrocentric chromosomes and there is insufficient data there to assert compartment scores at that part.

IcyYeyangchen commented 1 month ago

Ok， got it. Thx!