Get average interaction submatrices from pre established contact file

robinweide / GENOVA

GENome Organisation Visual Analytics

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Get average interaction submatrices from pre established contact file #359

Open Lucas446 opened 1 month ago

Lucas446 commented 1 month ago

Hi,

I would like to perform an PE-SCAn but not all-vs-all contact but rather from a bed file containing contacts (bedpe) (chr1 start1 end1 chr2 start2 end2), and I would like PE-SCAn to only look at those contacts, is it possible or is it through another GENOVA tools ?

Thanks a lot, Best, Tanguy

teunbrand commented 1 month ago

Hi there, this sounds a lot like the APA() function. Does this fit your needs?