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robjohnnoble / ggmuller

Create Muller Plots of Evolutionary Dynamics
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Can't get example to work #7

Closed bensprung closed 7 years ago

bensprung commented 7 years ago

Hi, I've installed ggmuller as suggested here https://thesefewlines.wordpress.com/2016/08/20/how-to-ggmuller/. However I get the following error:

> library(ggmuller)
> Muller_df <- get_Muller_df(example_edges, example_pop_df) >  
> Muller_plot(Muller_df) Error: All select() inputs must resolve to integer column positions. The following do not: *  colour_by

Any advice?

Thanks, Ben

robjohnnoble commented 7 years ago

Hi Ben, Sorry to hear that you've encountered a problem. The code works fine on my machine and on other systems (according to CRAN tests). Since your error is generated by dplyr, I suspect the issue might be that you're using a version of dplyr that's somehow incompatible with some ggmuller code. If your installed version of dplyr isn't the latest release version (v.0.7.4) then I suggest you install that version and try running the code again. Please let me know whether this solves the problem. Kind regards, Rob.

bensprung commented 7 years ago

Hi Rob, thanks for the fast help. Updating dplyr did the trick! Ben

robjohnnoble commented 7 years ago

Glad to hear it! Please could you tell me which version of dplyr produced the error? I might then add a note or a requirement to prevent the problem happening again. Cheers. Rob.

bensprung commented 7 years ago

Scrolling back, it looks like it was 0.5.0, because at one point I got this error message.

library(dplyr)Error in unloadNamespace(package) : namespace ‘dplyr’ is imported by ‘ggmuller’ so cannot be unloadedError in library(dplyr) : Package ‘dplyr’ version 0.5.0 cannot be unloaded

The funny thing is that it looks like the original install of ggmuller tried to install 0.7.4, but I guess it was unsuccessful:

library(devtools)> install_github("robjohnnoble/ggmuller")Downloading GitHub repo robjohnnoble/ggmuller@master from URL https://api.github.com/repos/robjohnnoble/ggmuller/zipball/masterInstalling ggmullertrying URL 'https://cran.rstudio.com/src/contrib/dplyr_0.7.4.tar.gz'Content type 'unknown' length 808054 bytes (789 KB)==================================================downloaded 789 KB Installing dplyrtrying URL 'https://cran.rstudio.com/src/contrib/BH_1.65.0-1.tar.gz'Content type 'unknown' length 10839577 bytes (10.3 MB)==================================================downloaded 10.3 MB

On Tue, Oct 3, 2017 at 10:33 AM, Rob Noble notifications@github.com wrote:

Glad to hear it! Please could you tell me which version of dplyr produced the error? I might then add a note or a requirement to prevent the problem happening again. Cheers. Rob.

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub https://github.com/robjohnnoble/ggmuller/issues/7#issuecomment-333861369, or mute the thread https://github.com/notifications/unsubscribe-auth/AIjH07wEs9SU76aE78DT9h_DklZnV-uLks5sokW6gaJpZM4PrcXE .

robjohnnoble commented 7 years ago

Thanks very much, Ben. I'll have a look into this. Rob.

bensprung commented 7 years ago

No prob. Thanks for making ggmuller available

On Oct 3, 2017 11:20 AM, "Rob Noble" notifications@github.com wrote:

Thanks very much, Ben. I'll have a look into this. Rob.

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub https://github.com/robjohnnoble/ggmuller/issues/7#issuecomment-333876761, or mute the thread https://github.com/notifications/unsubscribe-auth/AIjH00-cMzWox-ACDSS-hPDt_eQBKVSkks5solDZgaJpZM4PrcXE .