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roblanf / BenchmarkAlignments

Benchmark empirical datasets for phylogenetic method development
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run all alignments through geneious #23

Closed roblanf closed 10 months ago

roblanf commented 5 years ago

Right now some alignments differ just a little from others, e.g. in the inclusion of special characters in the species names, the use of lower and upper case letters etc.

A simple fix for this is to run all alignments through geneious, and export as nexus according to their specifications, replacing all special characters in species names. This will just standardise the formatting among datasets a little better.

roblanf commented 5 years ago

following this, all alignments will need to be re-zipped and uploaded to figshare.

roblanf commented 10 months ago

closing because we'll do this explicitly and reproducibly in Python now.