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roblanf / BenchmarkAlignments

Benchmark empirical datasets for phylogenetic method development
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empirical distributions #37

Open roblanf opened 5 years ago

roblanf commented 5 years ago

Suha's idea:

Include empirical distributions of all the things for all the datasets.

E.g.:

branch lengths GTR model parameters (also NonRev model parameters) base frequencies (these are already in the AMAS files) tree balance (per locus?? per dataset)

Lots of decisions to make here, but this has the potential to be a very useful resource.

roblanf commented 5 years ago

Other things to include:

likelihood mapping treelikeness proportion of all possible quartets from the tree that are in the various 'zones' (e.g. felsenstein, farris, etc.)