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roblanf / BenchmarkAlignments

Benchmark empirical datasets for phylogenetic method development
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name edits script and csv file #57

Open roblanf opened 11 months ago

roblanf commented 11 months ago

Sometimes we need to change names to remove special characters. To make this reproducible, we should have an

edit_names.py script in the utility scripts.

This should be run on every alignment. IF any names get changed in the original alignmnent, it should output a csv file with one name change per line, and two columns:

original_name, new_name
Homo-sapiens, Homo_sapiens