Closed roblanf closed 2 years ago
An IQ-TREE partition file looks like this:
#nexus begin sets; charset part1 = 1-100; charset part2 = 101-384; charpartition mine = HKY+G:part1, GTR+I+G:part2; end;
Let's imagine we have 3 classes, and each gets repeated a few times. In this case, we could output a file like:
#nexus begin sets; charset class_1 = 1-100 300-400 600-1000; charset class_2 = 101-299 401-599 1001-1100; end;
I.e. each class gets its own line and all sites that belong to that class are grouped together. The separator is just a space.
An IQ-TREE partition file looks like this:
Let's imagine we have 3 classes, and each gets repeated a few times. In this case, we could output a file like:
I.e. each class gets its own line and all sites that belong to that class are grouped together. The separator is just a space.