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roblanf / minion_qc

Quality control for MinION sequencing data
MIT License
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Use of num_events_template [legacy] #51

Open iiSeymour opened 4 years ago

iiSeymour commented 4 years ago

Hey @roblanf

Events are no longer relevant with modern basecallers and Guppy considers all event fields in the sequence summary as legacy. A cursory look at the code suggests only num_events_template is being used to colour the read length vs. q score scatterplot and I think a switch to template_duration would be suitable?

This is in preparation for adding a summary file output in bonito as I won't be adding any event related fields.

cc @jaquol

roblanf commented 4 years ago

OK - that sounds like a good idea. Will update when it's done.