robmaz / distmap

Sequence alignment on Hadoop
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Current version in master failure #57

Closed magicDGS closed 6 years ago

magicDGS commented 6 years ago

The current version in master (dd1b577526d4190fa22178fa67b8690483908a97) fails with the following error message when running ./bin/distmap (in my local computer):

Missing right curly or square bracket at /Users/daniel/workspaces/distmap_robmaz/bin/../lib/perl5/site_perl/DataProcess.pm line 170, within string
syntax error at /Users/daniel/workspaces/distmap_robmaz/bin/../lib/perl5/site_perl/DataProcess.pm line 170, at EOF
Compilation failed in require at ./bin/distmap line 13.
BEGIN failed--compilation aborted at ./bin/distmap line 13.

This happen when running with perl installed with brew (version ).

If I use the /usr/bin/perl (version ), the message changes a bit:

String found where operator expected at /Users/daniel/workspaces/distmap_robmaz/bin/../lib/perl5/site_perl/DataProcess.pm line 170, near "usage"}\n""
syntax error at /Users/daniel/workspaces/distmap_robmaz/bin/../lib/perl5/site_perl/DataProcess.pm line 175, near "}"
syntax error at /Users/daniel/workspaces/distmap_robmaz/bin/../lib/perl5/site_perl/DataProcess.pm line 172, near "($files_pair_list"
BEGIN not safe after errors--compilation aborted at /Users/daniel/workspaces/distmap_robmaz/bin/../lib/perl5/site_perl/DataProcess.pm line 187.
Compilation failed in require at bin/distmap line 13.
BEGIN failed--compilation aborted at bin/distmap line 13.

I would like to test my development of the ReadTools utility class (part of #53), but the failure does not allow to test a dry-run (--verbose option)

robmaz commented 6 years ago

Fixed in https://github.com/robmaz/distmap/commit/38e978f3c44e8d915da0b1d330a4985ee32de2bb

magicDGS commented 6 years ago

Thansk @robmaz!