Extract ReadToolsUtils for version and trimming - Githubissues

robmaz / distmap

Sequence alignment on Hadoop

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Extract ReadToolsUtils for version and trimming #63

Closed magicDGS closed 6 years ago

magicDGS commented 6 years ago

Includes:

Version constant
Extract method for handle JAVA_OPTS using jar files
Extract method to get correct arguments for ReadsToDistmap
Refactor related bin/distmap codepaths
Update distmap help with obsolete arguments and example with new syntax

Closes #53 Related with #33