Perl syntax check fails for almost every file in the bin package

[magicDGS]

Similar to #71, most of the bin fails the perl -c command:

• distmap

bin/distmap syntax OK

• bowtie_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/bowtie_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/bowtie_mapping.pl line 7.

• bwa_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/bwa_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/bwa_mapping.pl line 7.

• cluster_trimming.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/cluster_trimming.pl line 7.
BEGIN failed--compilation aborted at bin/cluster_trimming.pl line 7.

• download_merge_fastq.pl

bin/download_merge_fastq.pl syntax OK

• exonerate.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/exonerate.pl line 7.
BEGIN failed--compilation aborted at bin/exonerate.pl line 7.

• gsnap_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/gsnap_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/gsnap_mapping.pl line 7.

• ngm_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/ngm_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/ngm_mapping.pl line 7.

• novoalign_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/novoalign_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/novoalign_mapping.pl line 7.

• read-fasta.pl

bin/read-fasta.pl syntax OK

• soap_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/soap_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/soap_mapping.pl line 7.

• tophat_mapping.pl

Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at bin/tophat_mapping.pl line 7.
BEGIN failed--compilation aborted at bin/tophat_mapping.pl line 7.