Deprecate --only-merge and use always ReadTools for download - Githubissues

robmaz / distmap

Sequence alignment on Hadoop

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Deprecate --only-merge and use always ReadTools for download #79

Closed magicDGS closed 6 years ago

magicDGS commented 6 years ago

This PR removes all possible usages of DataDownload and DataMerge in favor of DataDownloadAndMerge. Includes:

Die in every method for deprecated classes
Deprecate --only-merge argument, using it for the same as --only-hdfs-download (and log a warning if used)
Update help for --only-merge and --only-hdfs-download

Part of #78