robotoD / GenoVi

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
Other
85 stars 11 forks source link

Tutorial fails #15

Closed erinyoung closed 8 months ago

erinyoung commented 1 year ago

I followed the installation instructions (used conda to install python and circos and then pip to install the latest version of GenoVi - which is 0.4.3).

I have been following the tutorial and ran into this issue

$ genovi -i input_test/Acinetobacter_radioresistens_DD78.gbff -cs strong -s complete --size                                                   
#0 4.922 [2023-11-08 21:07:23] deepnog.client.client - INFO - Starting deepnog                                                                                                     
#0 7.993 [2023-11-08 21:07:26] deepnog.client.client - INFO - Loading NN-parameters from /root/deepnog_data/cog2020/1/deepnog.pth ...                                              
#0 8.012 [2023-11-08 21:07:26] deepnog.client.client - INFO - Accessing dataset from genovi-temp/contig_1-genovi.faa ...                                                           
#0 8.069 [2023-11-08 21:07:26] deepnog.client.client - INFO - Starting protein sequence group/family inference ...                                                                 
#0 8.069 [2023-11-08 21:07:26] deepnog.learning.inference - INFO - Inference device: cpu
deepnog inference: 2.67kseq [00:42, 62.7seq/s]
#0 50.67 [2023-11-08 21:08:09] deepnog.learning.inference - INFO - Inference complete.
#0 50.68 [2023-11-08 21:08:09] deepnog.client.client - INFO - Writing prediction to genovi-temp/contig_1-genovi_prediction_deepnog.csv
#0 50.69 [2023-11-08 21:08:09] deepnog.client.client - INFO - All done.
#0 75.95 [2023-11-08 21:08:34] deepnog.client.client - INFO - Starting deepnog
#0 76.39 [2023-11-08 21:08:34] deepnog.client.client - INFO - Loading NN-parameters from /root/deepnog_data/cog2020/1/deepnog.pth ...
#0 76.41 [2023-11-08 21:08:34] deepnog.client.client - INFO - Accessing dataset from genovi-temp/contig_2-genovi.faa ...
#0 76.47 [2023-11-08 21:08:35] deepnog.client.client - INFO - Starting protein sequence group/family inference ...
#0 76.47 [2023-11-08 21:08:35] deepnog.learning.inference - INFO - Inference device: cpu
deepnog inference: 68.0seq [00:01, 59.0seq/s]
#0 77.62 [2023-11-08 21:08:36] deepnog.learning.inference - INFO - Inference complete.
#0 77.63 [2023-11-08 21:08:36] deepnog.client.client - INFO - Writing prediction to genovi-temp/contig_2-genovi_prediction_deepnog.csv
#0 77.63 [2023-11-08 21:08:36] deepnog.client.client - INFO - All done.
#0 83.83 [2023-11-08 21:08:42] deepnog.client.client - INFO - Starting deepnog
#0 84.23 [2023-11-08 21:08:42] deepnog.client.client - INFO - Loading NN-parameters from /root/deepnog_data/cog2020/1/deepnog.pth ...
#0 84.24 [2023-11-08 21:08:42] deepnog.client.client - INFO - Accessing dataset from genovi-temp/contig_3-genovi.faa ...
#0 84.30 [2023-11-08 21:08:42] deepnog.client.client - INFO - Starting protein sequence group/family inference ...
#0 84.30 [2023-11-08 21:08:42] deepnog.learning.inference - INFO - Inference device: cpu
deepnog inference: 71.0seq [00:00, 113seq/s]
#0 84.93 [2023-11-08 21:08:43] deepnog.learning.inference - INFO - Inference complete.
#0 84.93 [2023-11-08 21:08:43] deepnog.client.client - INFO - Writing prediction to genovi-temp/contig_3-genovi_prediction_deepnog.csv
#0 84.94 [2023-11-08 21:08:43] deepnog.client.client - INFO - All done.
#0 85.57 There's been an error finding cairoSVG library, so PNG images might be different from expected. Please prefer using SVG output.
#0 85.57 
#0 85.57 GBK file transformed into faa succesfully. File saved as genovi-temp/contig_1-genovi.faa
#0 85.57 output genovi-temp/contig_1-genovi
#0 85.57 
#0 85.57 Deepnog prediction started
#0 85.57 
#0 85.57 deepnog infer genovi-temp/contig_1-genovi.faa --out genovi-temp/contig_1-genovi_prediction_deepnog.csv -db cog2020 -t 1
#0 85.57 
#0 85.57 Deepnog prediction finished succesfully. Predictions saved as genovi-temp/contig_1-genovi_prediction_deepnog.csv
#0 85.57 
#0 85.57 genovi-temp/contig_1-genovi_bands.kar created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_tRNA_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_tRNA_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_rRNA_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_rRNA_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_C.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_D.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_E.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_F.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_G.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_H.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_I.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_J.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_K.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_L.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_M.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_N.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_O.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_P.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_Q.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_R.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_S.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_T.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_U.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_V.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_W.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_X.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos_None.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_A.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_C.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_D.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_E.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_F.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_G.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_H.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_I.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_J.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_K.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_L.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_M.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_N.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_O.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_P.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_Q.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_R.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_S.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_T.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_U.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_V.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_X.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg_None.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_1-genovi_CDS_neg.txt created succesfully.
#0 85.57 Transforming GenBank record CP038022.1 to .fna
#0 85.57 Done
#0 85.57 Drawing 1...
#0 85.57 
#0 85.57 GBK file transformed into faa succesfully. File saved as genovi-temp/contig_2-genovi.faa
#0 85.57 output genovi-temp/contig_2-genovi
#0 85.57 
#0 85.57 Deepnog prediction started
#0 85.57 
#0 85.57 deepnog infer genovi-temp/contig_2-genovi.faa --out genovi-temp/contig_2-genovi_prediction_deepnog.csv -db cog2020 -t 1
#0 85.57 
#0 85.57 Deepnog prediction finished succesfully. Predictions saved as genovi-temp/contig_2-genovi_prediction_deepnog.csv
#0 85.57 
#0 85.57 genovi-temp/contig_2-genovi_bands.kar created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_tRNA_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_tRNA_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_rRNA_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_rRNA_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_C.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_E.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_G.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_I.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_K.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_M.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_N.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_O.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_P.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_R.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_T.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_V.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_X.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos_None.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_C.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_D.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_H.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_I.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_K.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_L.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_M.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_N.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_O.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_P.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_R.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_V.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_X.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg_None.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_2-genovi_CDS_neg.txt created succesfully.
#0 85.57 Transforming GenBank record CP038023.1 to .fna
#0 85.57 Done
#0 85.57 Drawing 2...
#0 85.57 
#0 85.57 GBK file transformed into faa succesfully. File saved as genovi-temp/contig_3-genovi.faa
#0 85.57 output genovi-temp/contig_3-genovi
#0 85.57 
#0 85.57 Deepnog prediction started
#0 85.57 
#0 85.57 deepnog infer genovi-temp/contig_3-genovi.faa --out genovi-temp/contig_3-genovi_prediction_deepnog.csv -db cog2020 -t 1
#0 85.57 
#0 85.57 Deepnog prediction finished succesfully. Predictions saved as genovi-temp/contig_3-genovi_prediction_deepnog.csv
#0 85.57 
#0 85.57 genovi-temp/contig_3-genovi_bands.kar created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_tRNA_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_tRNA_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_rRNA_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_rRNA_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_neg.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_C.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_D.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_F.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_I.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_J.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_K.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_L.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_O.txt created succesfully.
#0 85.57 genovi-temp/contig_3-genovi_CDS_pos_R.txt created succesfully.[2023-11-08 21:08:49] deepnog.client.client - INFO - Starting deepnog
#0 91.67 [2023-11-08 21:08:50] deepnog.client.client - INFO - Loading NN-parameters from /root/deepnog_data/cog2020/1/deepnog.pth ...
#0 91.69 [2023-11-08 21:08:50] deepnog.client.client - INFO - Accessing dataset from genovi-temp/contig_4-genovi.faa ...
#0 91.74 [2023-11-08 21:08:50] deepnog.client.client - INFO - Starting protein sequence group/family inference ...
#0 91.74 [2023-11-08 21:08:50] deepnog.learning.inference - INFO - Inference device: cpu
deepnog inference: 70.0seq [00:01, 57.9seq/s]
#0 92.95 [2023-11-08 21:08:51] deepnog.learning.inference - INFO - Inference complete.
#0 92.95 [2023-11-08 21:08:51] deepnog.client.client - INFO - Writing prediction to genovi-temp/contig_4-genovi_prediction_deepnog.csv
#0 92.96 [2023-11-08 21:08:51] deepnog.client.client - INFO - All done.
#0 99.08 /usr/local/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
#0 99.08   "Premature end of file in sequence data", BiopythonParserWarning
#0 99.08 /usr/local/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
#0 99.08   "Premature end of file in sequence data", BiopythonParserWarning
#0 99.08 /usr/local/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
#0 99.08   "Premature end of file in sequence data", BiopythonParserWarning
#0 99.08 /usr/local/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
#0 99.08   "Premature end of file in sequence data", BiopythonParserWarning
#0 99.08 /usr/local/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
#0 99.08   "Premature end of file in sequence data", BiopythonParserWarning
#0 99.08 
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos_S.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos_T.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos_U.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos_V.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos_X.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos_None.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_C.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_D.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_E.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_G.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_J.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_K.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_L.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_M.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_N.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_O.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_P.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_Q.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_R.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_T.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_U.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_V.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_X.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg_None.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_pos.txt created succesfully.
#0 99.08 genovi-temp/contig_3-genovi_CDS_neg.txt created succesfully.
#0 99.08 Transforming GenBank record CP038024.1 to .fna
#0 99.08 Done
#0 99.08 Drawing 3...
#0 99.08 
#0 99.08 GBK file transformed into faa succesfully. File saved as genovi-temp/contig_4-genovi.faa
#0 99.08 output genovi-temp/contig_4-genovi
#0 99.08 
#0 99.08 Deepnog prediction started
#0 99.08 
#0 99.08 deepnog infer genovi-temp/contig_4-genovi.faa --out genovi-temp/contig_4-genovi_prediction_deepnog.csv -db cog2020 -t 1
#0 99.08 
#0 99.08 Deepnog prediction finished succesfully. Predictions saved as genovi-temp/contig_4-genovi_prediction_deepnog.csv
#0 99.08 
#0 99.08 genovi-temp/contig_4-genovi_bands.kar created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_tRNA_pos.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_tRNA_neg.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_rRNA_pos.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_rRNA_neg.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_C.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_D.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_H.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_I.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_J.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_K.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_L.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_M.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_O.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_P.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_Q.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_R.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_V.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_X.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos_None.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_C.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_H.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_I.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_J.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_K.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_L.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_M.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_O.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_P.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_Q.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_R.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_S.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_T.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_V.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_X.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg_None.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_pos.txt created succesfully.
#0 99.08 genovi-temp/contig_4-genovi_CDS_neg.txt created succesfully.
#0 99.08 Transforming GenBank record CP038025.1 to .fna
#0 99.08 Done
#0 99.08 Drawing 4...
#0 99.08 Traceback (most recent call last):
#0 99.08   File "/usr/local/bin/genovi", line 8, in <module>
#0 99.08     sys.exit(main())
#0 99.08   File "/usr/local/lib/python3.7/site-packages/scripts/GenoVi.py", line 685, in main
#0 99.08     visualiseGenome(*get_args())
#0 99.08   File "/usr/local/lib/python3.7/site-packages/scripts/GenoVi.py", line 421, in visualiseGenome
#0 99.08     os.rename(output_file + "-contig_" + str(i) + ".png", output_file + "/" + output_file + "-contig_" + str(i) + ".png")
#0 99.08 FileNotFoundError: [Errno 2] No such file or directory: 'genovi-contig_1.png' -> 'genovi/genovi-contig_1.png'