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robotoD / GenoVi

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
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Output colours used for COGs in plots and legends do not match #6

Open LesleyHoyles opened 1 year ago

LesleyHoyles commented 1 year ago

While the colours for the legends for Genomic Features match those shown in genome plots, those for the COGs do not. E.g. #909090 used for COG category S on plot, but #999999 used in legend; #626262 used for COG category R on plot, but #696969 in legend. I only noticed this when I tried searching for same colours across the genovi outputs in Illustrator. Not a huge issue as you have made it possible to run genovi with specific COG outputs, but means that if I and others want to highlight specific aspects of complex plots there's no way we can match/find COG categories in the images.

LesleyHoyles commented 1 year ago

Also, the following may be helpful for others if they come across a run error related to the following. "Could not load library libcudnn_cnn_infer.so.8. Error: libcuda.so: cannot open shared object file: No such file or directory"

export LD_LIBRARY_PATH=/usr/lib/wsl/lib:$LD_LIBRARY_PATH and run again. Fixed the problem for me (I did initial installation using conda instructions on your github page).