Add cap to numpy and shapely version support, fix tests, upgrade precommit

[scottclowe]

• Upgrade outdated tests
• Constrain requirements with upper bounds numpy>=1.13.0,<1.24 and shapely>=1.5.17,<2.0 as we do not currently support newer versions of these dependencies. Numpy 1.24 stopped automatically detecting ragged arrays, which now need to be specified with dtype=object. Shapely 2.0 has some backward-incompatible API changes.

Closes #285. Closes #290.

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Codecov Report

Attention: Patch coverage is 75.00000% with 1 line in your changes missing coverage. Please review.

Project coverage is 83.47%. Comparing base (8cf6a17) to head (1641e43). Report is 14 commits behind head on master.

Files with missing lines	Patch %	Lines
fissa/readimagejrois.py	0.00%	1 Missing :warning:

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HEAD has 149 uploads less than BASE

| Flag | BASE (8cf6a17) | HEAD (1641e43) | |------|------|------| |unittests|82|0| |nbsmoke|67|0|

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```diff @@ Coverage Diff @@ ## master #291 +/- ## =========================================== - Coverage 94.08% 83.47% -10.62% =========================================== Files 8 8 Lines 1217 1198 -19 Branches 313 304 -9 =========================================== - Hits 1145 1000 -145 - Misses 36 162 +126 Partials 36 36 ``` | [Flag](https://app.codecov.io/gh/rochefort-lab/fissa/pull/291/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=rochefort-lab) | Coverage Δ | | |---|---|---| | [nbsmoke](https://app.codecov.io/gh/rochefort-lab/fissa/pull/291/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=rochefort-lab) | `?` | | | [unittests](https://app.codecov.io/gh/rochefort-lab/fissa/pull/291/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=rochefort-lab) | `?` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=rochefort-lab#carryforward-flags-in-the-pull-request-comment) to find out more.

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