500: Internal Server Error

davidyakobovitch commented 3 years ago

With the latest build, after launching at:

localhost:8888 and clicking new Rstudio, this error appears, dated Nov. 28, 2020; with a pull directly from

docker pull rocker/binder:latest

500 : Internal Server Error
The error was:

could not start rstudio in time

Full error tracelog below:

docker inspect rocker/binder:latest
[
    {
        "Id": "sha256:b3091f942607e821796b38230cc6fead9afc33e1ffc3df0d75e005e584a383df",
        "RepoTags": [
            "rocker/binder:latest"
        ],
        "RepoDigests": [
            "rocker/binder@sha256:c2fcea20617a062c2a1db0de434d2f37190173f6378762533934fc3d3ff8b858"
        ],
        "Parent": "",
        "Comment": "",
        "Created": "2020-11-13T06:29:02.44101713Z",
        "Container": "da1be7643d29021b1c00ed276667f3976ab5f163e79944a77eb734590989d062",
        "ContainerConfig": {
            "Hostname": "da1be7643d29",
            "Domainname": "",
            "User": "rstudio",
            "AttachStdin": false,
            "AttachStdout": false,
            "AttachStderr": false,
            "ExposedPorts": {
                "8787/tcp": {}
            },
            "Tty": false,
            "OpenStdin": false,
            "StdinOnce": false,
            "Env": [
                "PATH=/usr/local/texlive/bin/x86_64-linux:/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
                "R_VERSION=4.0.3",
                "TERM=xterm",
                "LC_ALL=en_US.UTF-8",
                "LANG=en_US.UTF-8",
                "R_HOME=/usr/local/lib/R",
                "CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/latest",
                "TZ=Etc/UTC",
                "S6_VERSION=v2.1.0.2",
                "RSTUDIO_VERSION=latest",
                "CTAN_REPO=http://mirror.ctan.org/systems/texlive/tlnet",
                "NB_USER=rstudio"
            ],
            "Cmd": [
                "/bin/sh",
                "-c",
                "#(nop) WORKDIR /home/rstudio"
            ],
            "Image": "sha256:8fcaaa2a0f201e962f7958141edffdaa923849143ac8518d95fb274b7d25bbac",
            "Volumes": null,
            "WorkingDir": "/home/rstudio",
            "Entrypoint": null,
            "OnBuild": null,
            "Labels": {
                "maintainer": "Carl Boettiger <cboettig@ropensci.org>",
                "org.label-schema.license": "GPL-2.0",
                "org.label-schema.vcs-url": "https://github.com/rocker-org/rocker-versioned",
                "org.label-schema.vendor": "Rocker Project"
            }
        },
        "DockerVersion": "19.03.1",
        "Author": "",
        "Config": {
            "Hostname": "",
            "Domainname": "",
            "User": "rstudio",
            "AttachStdin": false,
            "AttachStdout": false,
            "AttachStderr": false,
            "ExposedPorts": {
                "8787/tcp": {}
            },
            "Tty": false,
            "OpenStdin": false,
            "StdinOnce": false,
            "Env": [
                "PATH=/usr/local/texlive/bin/x86_64-linux:/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
                "R_VERSION=4.0.3",
                "TERM=xterm",
                "LC_ALL=en_US.UTF-8",
                "LANG=en_US.UTF-8",
                "R_HOME=/usr/local/lib/R",
                "CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/latest",
                "TZ=Etc/UTC",
                "S6_VERSION=v2.1.0.2",
                "RSTUDIO_VERSION=latest",
                "CTAN_REPO=http://mirror.ctan.org/systems/texlive/tlnet",
                "NB_USER=rstudio"
            ],
            "Cmd": [
                "/bin/sh",
                "-c",
                "jupyter notebook --ip 0.0.0.0"
            ],
            "Image": "sha256:8fcaaa2a0f201e962f7958141edffdaa923849143ac8518d95fb274b7d25bbac",
            "Volumes": null,
            "WorkingDir": "/home/rstudio",
            "Entrypoint": null,
            "OnBuild": null,
            "Labels": {
                "maintainer": "Carl Boettiger <cboettig@ropensci.org>",
                "org.label-schema.license": "GPL-2.0",
                "org.label-schema.vcs-url": "https://github.com/rocker-org/rocker-versioned",
                "org.label-schema.vendor": "Rocker Project"
            }
        },
        "Architecture": "amd64",
        "Os": "linux",
        "Size": 5715688324,
        "VirtualSize": 5715688324,
        "GraphDriver": {
            "Data": {
                "LowerDir": "/var/lib/docker/overlay2/29d7c1781e7b6c9a960d4f82f3fcc85bada2d4f23f2cfd90c44cb0c89ef55699/diff:/var/lib/docker/overlay2/c5a6c14922b0d5aec4ff7b6d1f175a0f7c1e579cc9ac41cfab9e8095771b7136/diff:/var/lib/docker/overlay2/78617e6c4b83e5b22526eadaa74faee59ce66ea6fff4d0a1bb66c32cfc732918/diff:/var/lib/docker/overlay2/71afb1dbedcc59c4d0828e9ad56d5402145be448c0c021b912901a2e24ba51d9/diff:/var/lib/docker/overlay2/476c24571e5665e56163b82ff65a6d7565c727d5eedd9ba72446f8f8827b0007/diff:/var/lib/docker/overlay2/9da9b7fe3464448388d4b060b0974dd47ff5ab938306204c0319a850ed46f779/diff:/var/lib/docker/overlay2/6bc1498c02413ab12ec235cbd5336f9b8b7427f7294410d5c6fab370663a1f41/diff:/var/lib/docker/overlay2/c428715708d2f9f27ac5a798cd6ca385ca6ed87ad3155774b9868fbd46235ff6/diff:/var/lib/docker/overlay2/6c088db8e08632cc9b03087ec12b40b1d7f83c8372a528e3509a876134c94e5a/diff:/var/lib/docker/overlay2/8e9466e9d8a95751e8d710ade0b9e8ee34adad122b789a7e3c40df4322884b72/diff:/var/lib/docker/overlay2/689021e994a162cfe869516cafed69585ad333c5ccff5e4de36203f6ae5d27b8/diff:/var/lib/docker/overlay2/e31702f87d55196329a3617e8480172ba43a396e472c50946da577224ad58552/diff",
                "MergedDir": "/var/lib/docker/overlay2/8ad7b483bc37f523e0d612d0ae47289f720442a4bacf5e1bde63709102f398b7/merged",
                "UpperDir": "/var/lib/docker/overlay2/8ad7b483bc37f523e0d612d0ae47289f720442a4bacf5e1bde63709102f398b7/diff",
                "WorkDir": "/var/lib/docker/overlay2/8ad7b483bc37f523e0d612d0ae47289f720442a4bacf5e1bde63709102f398b7/work"
            },
            "Name": "overlay2"
        },
        "RootFS": {
            "Type": "layers",
            "Layers": [
                "sha256:e1c75a5e0bfa094c407e411eb6cc8a159ee8b060cbd0398f1693978b4af9af10",
                "sha256:9e97312b63ff63ad98bb1f3f688fdff0721ce5111e7475b02ab652f10a4ff97d",
                "sha256:ec1817c93e7c08d27bfee063f0f1349185a558b87b2d806768af0a8fbbf5bc11",
                "sha256:05f3b67ed530c5b55f6140dfcdfb9746cdae7b76600de13275197d009086bb3d",
                "sha256:eae5f69ee969bff0d5efe88f1ad959c70950e753047446bc7504b70610e95d95",
                "sha256:24eab26fd630a3793b8c355e49012640db0649ea6631d8275e7535476d5dea73",
                "sha256:c2d92965ff0cebee849714853668b78f0b39216841682edcc75216121719b727",
                "sha256:cf81c78d35f99d7be655682b3d045211400c093dd812a8f085c08f645e892078",
                "sha256:949275ddbb9ecbd1811ac3f5347df0efa3b44c257fda0c23762e2a8d641f215a",
                "sha256:7e6741743dfc977dfaf36b42c6c30c7d8701297bd94a5b918f9a97e6e7439c1b",
                "sha256:88e3d41cf349c67d4bb221df39c73ed6846877cb301c817eae6e7408c667fa2f",
                "sha256:7a983626f10842a95a2c03de35c940e3dc468d3616beb1d4f588efe8d253c4b5",
                "sha256:55350c47f9af28ce11ab06e514111622a1835bc3b8724fd39cad2bb94810014f"
            ]
        },
        "Metadata": {
            "LastTagTime": "0001-01-01T00:00:00Z"
        }
    }
]

Robinlovelace commented 3 years ago

This can also be reproduced on DockerHub:

Source, from the README of this repo: https://mybinder.org/v2/gh/rocker-org/binder/master?urlpath=rstudio

louisaslett commented 3 years ago

I think this is being discussed at the new repo here (adding for others like me who stumble into the old repo): rocker-org/rocker-versioned2#88

Perhaps an admin can close this issue?

rocker-org / binder

500: Internal Server Error #44