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rocker-org / rocker-versioned

Run current & prior versions of R using docker
https://hub.docker.com/r/rocker/r-ver
GNU General Public License v2.0
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rocker/r-ver:devel needs to be rebuilt #197

Closed nturaga closed 4 years ago

nturaga commented 4 years ago

Hi @cboettig

Can you issue a rebuild of rocker/r-ver:devel on dockerhub, so that it captures the latest revision of r-devel (r78000) ?

When I try to build locally, I get the error

checking whether PCRE support suffices... no
configure: error: PCRE2 library and headers are required, or use --with-pcre1 and PCRE >= 8.32 with UTF-8 support
/bin/sh: 1: Rscript: not found

The latest r-devel contains some significant changes such as stringsAsFactors = FALSE needs to be changed to stringsAsFactors=TRUE.

Best regards,

Nitesh

eddelbuettel commented 4 years ago

[ I know you asked for r-ver but if you want r-devel I have the rocker/r-devel and rocker/drd images on a weekly cronjob -- fresh every Sunday. Ditto for r-patched in rocker/drp. ]

nturaga commented 4 years ago

Thanks @eddelbuettel , I guess my end goal is to be able to use the latest r-devel from rocker/rstudio:devel. And since rocker/rstudio:devel depends on rocker/r-ver:devel, i thought this needed to go through.

eddelbuettel commented 4 years ago

Turns out it is (likely) the pre-release stage of R itself. I just pulled a refreshed drd, and had checked it built on the weekend yet

edd@rob:~$ docker run --rm -ti rocker/drd RD --version
R Under development (unstable) (2020-03-07 r77914) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.

edd@rob:~$

We had that once before leading up to a new R release but I have too many other balls in the air now to deal with this. You may have to build locally if you need an immediate fix as I would surmise that the r-devel images is affected similarly.

eddelbuettel commented 4 years ago

Found the issue reported three days ago -- caching is too blame:

edd@rob:~$ docker run --rm -ti rocker/r-devel RD --version | head -1
R Under development (unstable) (2020-03-22 r78027) -- "Unsuffered Consequences"
edd@rob:~$ docker run --rm -ti rocker/drd RD --version | head -1
R Under development (unstable) (2020-03-21 r78023) -- "Unsuffered Consequences"
edd@rob:~$

The (rather large) rocker/r-devel and the (more compact) rocker/drd are both up-to-date. One uses SVN, the other downloads a tarball hence the slight difference in commits. Both rebuilt this morning and settings changed so that the weekly builds should again produce fresh weekly images.

cboettig commented 4 years ago

build has been tickled. (r-ver has too many tags now and hub seems to be struggling with the cron triggers, hope to have this fixed probably in time for the 4.0.0 release)

nturaga commented 4 years ago

@cboettig Can you tickle the rocker/rstudio:devel build as well please? :D

cboettig commented 4 years ago

queued!