turn off for `rocker/verse` devel build that is currently failing

[cboettig]

turn of cron job that is currently failing

[eitsupi]

Why do you want to do this? And why don't you change it so that you don't only build verse, since it seems to be only verse is failing?

[cboettig]

@eitsupi thanks, good idea!

[cboettig]

better?

[eitsupi]

Do you know why the rocker/verse build is failing in the first place? The log shows the following:

Details

```log #30 292.3 * installing *source* package ‘rJava’ ... #30 292.3 ** package ‘rJava’ successfully unpacked and MD5 sums checked #30 292.3 ** using staged installation #30 292.3 checking for gcc... gcc #30 292.3 checking whether the C compiler works... yes #30 292.3 checking for C compiler default output file name... a.out #30 292.3 checking for suffix of executables... #30 292.3 checking whether we are cross compiling... no #30 292.3 checking for suffix of object files... o #30 292.3 checking whether we are using the GNU C compiler... yes #30 292.3 checking whether gcc accepts -g... yes #30 292.3 checking for gcc option to accept ISO C89... none needed #30 292.3 checking how to run the C preprocessor... gcc -E #30 292.3 checking for grep that handles long lines and -e... /usr/bin/grep #30 292.3 checking for egrep... /usr/bin/grep -E #30 292.3 checking for ANSI C header files... yes #30 292.3 checking for sys/wait.h that is POSIX.1 compatible... yes #30 292.3 checking for sys/types.h... yes #30 292.3 checking for sys/stat.h... yes #30 292.3 checking for stdlib.h... yes #30 292.3 checking for string.h... yes #30 292.3 checking for memory.h... yes #30 292.3 checking for strings.h... yes #30 292.3 checking for inttypes.h... yes #30 292.3 checking for stdint.h... yes #30 292.3 checking for unistd.h... yes #30 292.3 checking for string.h... (cached) yes #30 292.3 checking sys/time.h usability... yes #30 292.3 checking sys/time.h presence... yes #30 292.3 checking for sys/time.h... yes #30 292.3 checking for unistd.h... (cached) yes #30 292.3 checking for an ANSI C-conforming const... yes #30 292.3 checking whether time.h and sys/time.h may both be included... yes #30 292.3 configure: checking whether gcc supports static inline... #30 292.3 yes #30 292.3 checking whether setjmp.h is POSIX.1 compatible... yes #30 292.3 checking whether sigsetjmp is declared... yes #30 292.3 checking whether siglongjmp is declared... yes #30 292.3 checking Java support in R... present: #30 292.3 interpreter : '/usr/bin/java' #30 292.3 archiver : '/usr/bin/jar' #30 292.3 compiler : '/usr/bin/javac' #30 292.3 header prep.: '' #30 292.3 cpp flags : '-I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux' #30 292.3 java libs : '-L/usr/lib/jvm/java-21-openjdk-amd64/lib/server -ljvm' #30 292.3 checking whether Java run-time works... ./configure: line 3796: /usr/bin/java: No such file or directory #30 292.3 no #30 292.3 configure: error: Java interpreter '/usr/bin/java' does not work #30 292.3 ERROR: configuration failed for package ‘rJava’ #30 292.3 * removing ‘/usr/local/lib/R/site-library/rJava’ #30 292.3 #30 292.3 The downloaded source packages are in #30 292.3 ‘/tmp/downloaded_packages’ #30 292.3 Error: installation of package ‘rJava’ failed #30 292.3 In addition: Warning messages: #30 292.3 1: package ‘rmdshower’ is not available for this version of R #30 292.3 #30 292.3 A version of this package for your version of R might be available elsewhere, #30 292.3 see the ideas at #30 292.3 https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages #30 292.3 2: In install.packages(pkgs, ...) : installation of package ‘rJava’ failed #30 ERROR: process "/bin/sh -c /rocker_scripts/install_verse.sh" did not complete successfully: exit code: 1 ------ > [22/23] RUN /rocker_scripts/install_verse.sh: 292.3 The downloaded source packages are in 292.3 ‘/tmp/downloaded_packages’ 292.3 Error: installation of package ‘rJava’ failed 292.3 In addition: Warning messages: 292.3 1: package ‘rmdshower’ is not available for this version of R 292.3 292.3 A version of this package for your version of R might be available elsewhere, 292.3 see the ideas at 292.3 https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages 292.3 2: In install.packages(pkgs, ...) : installation of package ‘rJava’ failed ------ verse_devel.Dockerfile:46 -------------------- 44 | COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh 45 | COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh 46 | >>> RUN /rocker_scripts/install_verse.sh 47 | 48 | COPY scripts /rocker_scripts -------------------- ERROR: failed to solve: process "/bin/sh -c /rocker_scripts/install_verse.sh" did not complete successfully: exit code: 1 make: *** [Makefile:49: bake-json/verse] Error 1 Error: Process completed with exit code 2. ```

[benz0li]

@eitsupi Remove package rmdshower.

It has been archived for a long time: https://cran.r-project.org/package=rmdshower

[eitsupi]

Thank you. But the option to ignore non-existent packages is enabled, so that should not be the cause of the build failure. I think the problem is rJava installation failure.

[benz0li]

Thank you. But the option to ignore non-existent packages is enabled, so that should not be the cause of the build failure.

Agreed. (IMHO non-existent packages should be removed. Otherwise the install scripts are misleading.)

I think the problem is rJava installation failure.

Yes. Because of default-jdk installing OpenJDK 21?

Are you on Ubuntu 22.04 or 24.04?

[benz0li]

https://hub.docker.com/_/ubuntu: ubuntu:latest = ubuntu:24.04