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rocker-org / rocker

R configurations for Docker
https://rocker-project.org
GNU General Public License v2.0
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how to create password for using rstudio docker #359

Closed chenhongbayer closed 4 years ago

chenhongbayer commented 4 years ago

from your documentation of running rocker/rstudio, it needs PASSWORD=, where do i go set up this password?

cboettig commented 4 years ago

apologies for the confusion, that's where you specify your own password -- anything you want, so long as it is a secret! (the password cannot be "rstudio").

chenhongbayer commented 4 years ago

great. thank you! I tried and got error below, not sure what issue it is: ubuntu@ip-172-31-38-113:~/rstudio-daily/latest$ docker build -t rstudio ./ Sending build context to Docker daemon 5.632kB Step 1/3 : FROM rocker/rstudio ---> 95f62e1bd0f4 Step 2/3 : RUN apt-get update && apt-get install -y --no-install-recommends libxml2-dev libssl-dev procps rrdtool libclang-dev && install2.r xml2 httr && wget --no-check-certificate https://raw.githubusercontent.com/rocker-org/rstudio-daily/master/latest.R && Rscript latest.R && rm latest.R ---> Using cache ---> a29238a4d24b Step 3/3 : RUN dpkg -i rstudio-server-daily-amd64.deb && rm rstudio-server-*-amd64.deb && ln -s -f /usr/lib/rstudio-server/bin/pandoc/pandoc /usr/local/bin && ln -s -f /usr/lib/rstudio-server/bin/pandoc/pandoc-citeproc /usr/local/bin && apt-get clean ---> Using cache ---> 256754dbb9c4 Successfully built 256754dbb9c4 Successfully tagged rstudio:latest ubuntu@ip-172-31-38-113:~/rstudio-daily/latest$ docker run -it -e PASSWORD=kSUtest rstudio [s6-init] making user provided files available at /var/run/s6/etc...exited 0. [s6-init] ensuring user provided files have correct perms...exited 0. [fix-attrs.d] applying ownership & permissions fixes... [fix-attrs.d] done. [cont-init.d] executing container initialization scripts... [cont-init.d] add: executing... Nothing additional to add [cont-init.d] add: exited 0. [cont-init.d] userconf: executing... [cont-init.d] userconf: exited 0. [cont-init.d] done. [services.d] starting services [services.d] done. 20 Sep 2019 16:45:19 [rserver] DEBUG (PID 208): Acquired lock: /var/run/rstudio-server/revocation-list.lock

20 Sep 2019 16:45:19 [rserver] DEBUG (PID 208): Released lock: /var/run/rstudio-server/revocation-list.lock

cboettig commented 4 years ago

Apologies again, those are not error messages! [services.d] done. is just telling you that it has successfully brought up RStudio for you, and is waiting for you to connect. Unfortunately you haven't bound an internet port, you probably wanted a -p 8787:8787 in your arguments to docker , see docs

chenhongbayer commented 4 years ago

got it. thank you for the help! actually my goal is pretty simple, which is to run a simple R script. So maybe instead of using rocker/rstudio, is there an image that has r-base + devtools that allow me to install python3-pip and libcurl4-openssl-dev libssl-dev libssh2-1-dev libxml2-dev on top of the image?

eddelbuettel commented 4 years ago

In that case you more-or-less started with the wrong container :)

Maybe scan our R Journal paper for an overview? Personally, I do a fair amount of customization on top of the r-base image that is the same as rocker/r-base.

chenhongbayer commented 4 years ago

thanks Carl and Dirk! I used r-base add on top of it a couple of developing tools building an image of my own and it eventually worked for my script.

eddelbuettel commented 4 years ago

Ok, if you're all good I will close this ticket.

chenhongbayer commented 4 years ago

Sure. Thanks!

Best regards,

Chenhong Zhang Data Manager

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From: Dirk Eddelbuettel notifications@github.com Reply-To: rocker-org/rocker reply@reply.github.com Date: Monday, September 23, 2019 at 12:56 PM To: rocker-org/rocker rocker@noreply.github.com Cc: chenhongbayer chenhong.zhang@bayer.com, Author author@noreply.github.com Subject: Re: [rocker-org/rocker] how to create password for using rstudio docker (#359)

Ok, if you're all good I will close this ticket.

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