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rodrigarc / scifer

Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
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Add specific integration for light chains QC #20

Closed rodrigarc closed 2 months ago

rodrigarc commented 1 year ago

Create an option specific to light chains, this would call an LC_report.Rmd instead of a HC. Or the processing of LC is in the same file but there is a conditional argument somewhere to do that. The first option is easier but much of the code is reused so I would prefer to try to avoid copy and pasting similar chunks of code.

rodrigarc commented 5 months ago

At the moment, the user should just change the raw_length and trim_finish based on their amplicon length.