Closed TallyWright closed 5 years ago
I see the same error on travis-ci, looking into this soon.....
I accidentally deleted a line from the DESCRIPTION file, oops! It's now updated on github, and I will put out a new release when I get the chance. In the meantime, can you build it off git and confirm that it works?
I've built on github using the same method, all seems to work fine! There are some warnings, but they don't seem to effect the functionality:
Warning: replacing previous import 'igraph::decompose' by 'stats::decompose' when loading 'mpMap2'
Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when loading 'mpMap2'
Warning: replacing previous import 'stats::hclust' by 'fastcluster::hclust' when loading 'mpMap2'
** help
*** installing help indices
converting help for package 'mpMap2'
finding HTML links ... done
addExtraMarkerFromRawCall html
addExtraMarkers html
finding level-2 HTML links ... done
Rd warning: C:/Users/x991625/AppData/Local/Temp/RtmpusuQok/R.INSTALL5c507b5fc71/mpMap2/man/addExtraMarkers.Rd:30: missing link 'orderCross'
biparentalDominant html
combineMpcross html
detailedPedigree-class html
Rd warning: C:/Users/x991625/AppData/Local/Temp/RtmpusuQok/R.INSTALL5c507b5fc71/mpMap2/man/detailedPedigree-class.Rd:48: file link 'detailedPedigree' in package 'mpMap2' does not exist and so has been treated as a topic
eightParentPedigreeImproperFunnels html
eightParentPedigreeRandomFunnels html
eightParentPedigreeSingleFunnel html
estimateMap html
Rd warning: C:/Users/x991625/AppData/Local/Temp/RtmpusuQok/R.INSTALL5c507b5fc71/mpMap2/man/estimateMap.Rd:22: file link 'qtl-package' in package 'qtl' does not exist and so has been treated as a topic
estimateRF html
f2Pedigree html
formGroups html
fourParentPedigreeRandomFunnels html
fourParentPedigreeSingleFunnel html
imputeFounders html
internalOperators html
mapFunctions html
pedigree-class html
rilPedigree html
simulateMPCross html
sixteenParentPedigreeRandomFunnels html
twoParentPedigree html
building package indices
testing if installed package can be loaded
arch - i386
Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when loading 'mpMap2'
Warning: replacing previous import 'igraph::decompose' by 'stats::decompose' when loading 'mpMap2'
Warning: replacing previous import 'stats::hclust' by 'fastcluster::hclust' when loading 'mpMap2'
arch - x64
Warning: replacing previous import 'igraph::decompose' by 'stats::decompose' when loading 'mpMap2'
Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when loading 'mpMap2'
Warning: replacing previous import 'stats::hclust' by 'fastcluster::hclust' when loading 'mpMap2'
Thanks!
To use mpmapinteractive2 - I've updated to R version 3.5.2 (2018-12-20) and I'm trying to reinstall mpMap2. I'm using the same method I used for the older R version. However, the package compile now fails. I have tested with Rtools version 33 and 35. The same error appears.
I'm using devtools :: install_github("rohan-shah/mpMap2")
The output is:
Installing package into ‘C:/Users/x991625/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)
*** arch - i386 c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-35~1.2/include" -DNDEBUG -I. -DUSE_OPENMP -fopenmp -O2 -Wall -mtune=generic -c alleleDataErrors.cpp -o alleleDataErrors.o In file included from alleleDataErrors.cpp:1:0: alleleDataErrors.h:3:18: fatal error: Rcpp.h: No such file or directory
include
compilation terminated. make: *** [alleleDataErrors.o] Error 1 ERROR: compilation failed for package 'mpMap2'
Thanks!