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rohan-shah / mpMap2

New version of mpMap
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how to prepare a pedigree object with my own pedigree information when construct a mpcross object #6

Open woaishiye opened 2 years ago

woaishiye commented 2 years ago

Hi, i am using mpMap2 to construct a genetic map for a eightparent magic population, and now i am preparing the input data for mpMap2. But I can't understand how to use my own pedigree information to build the pedigree object that needed by mpMap2. And by the way, how can i get prepare the hetData with my SNPs??

Acturally i have the SNPs data in vcf format for founders and lines and the pedigree information for all the lines and now i want to use the data i have to construct a genetic map by using mpMap2. what should i do???

please help me, please~~~

attached if the pedigree information in excel.

rohan-shah-nearmap commented 1 year ago

Sorry I never responded to this at the time :( I no longer work in this area, so in any case I'm not really in a position to help people like this. The best I can do these days is point people to the documentation I wrote at the time (see https://github.com/rohan-shah/mpMap2Paper/releases/tag/v0.0.3).