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rohitrango / FireANTs

Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration
Apache License 2.0
19 stars 2 forks source link

backwards compatibility with ANTs #2

Open rohitrango opened 2 months ago

rohitrango commented 2 months ago

All registration outputs (Affine matrices, warp fields) should be saved in a format usable by existing toolkits (like ANTs).

cookpa commented 2 months ago

+1 on this, ITK transforms are also widely used in the various niprep tools, and can be converted to other formats via nibabel. I think the connectome workbench can also translate to / from FSL fnirt warps.

I have switched to using h5 composite transforms, the separate affine.mat + nii.gz warp introduces a lot of unnecessary confusion.