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roland-rad-lab / MoCaSeq

Analysis pipelines for cancer genome sequencing in mice.
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Manual installation and run #12

Closed soumyarao86 closed 2 years ago

soumyarao86 commented 2 years ago

Hi, I am using anaconda and can't use docker. Is there a way to run the commands on Ubuntu? I have got the code but am not sure if manual installation requires any additional steps or not. 

https://github.com/roland-rad-lab/MoCaSeq.git

Regards, Soumya

NikdAK commented 2 years ago

Hi Soumya,

you would need to rebuild the entire environment in anaconda.

All the commands are Ubuntu-based and you can finde them in the Dockerfile. Just remove the "RUN" infront of every installation command.

You can also check the updated version found here: https://github.com/roland-rad-lab/MoCaSeq/blob/human-pipeline/Dockerfile

Good luck!

soumyarao86 commented 2 years ago

Thanks you. I will try to rebuild the environment in anaconda.