search

roland-rad-lab / MoCaSeq

Analysis pipelines for cancer genome sequencing in mice.
Other
20 stars 15 forks source link

Docs for the `-rb` option #14

Closed soymintc closed 1 year ago

soymintc commented 1 year ago

Hi,

I'm trying to run MoCaSeq using pre-aligned bams to GRCm38/mm10. Since I'm using paired bam files as input, I'd be using -nb and -tb options. README says I have to specify the -rb option, however, I can't find any information about it. Could you please add some info about this option in README or its corresponding docs?

Thank you 👍

NikdAK commented 1 year ago

Hi, this might be a typo and actually should be -rm in the docs (--repeat_mapping, which is true by default anyways). I think it should work if you just start it :)

soymintc commented 1 year ago

Hi @NikdAK thanks for the reply! No worries then. Will close the issue 👍