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Issue tracking for ROM Herpetology data in the VertNet portal (portal.vertnet.org).
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[ROM Reptiles and Amphibians 23100] Unverified - Data field misalignment #14

Closed tucotuco closed 10 years ago

tucotuco commented 10 years ago

It looks like the fields for this entire data set are mis-mapped. Examples: month=19770000, VerbatimEventDate=Tissue only.

The value of PreservedTissue in basisOfRecord, if correctly mapped, is not a valid value for the term. Tissues should have basisOfRecord=MaterialSample

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You can view the original detail page on VertNet. Here are the original record contents:

Term Value
CollectionID urn:lsid:biocol.org:col:34833
InstitutionCode Royal Ontario Museum: ROM
CollectionCode Reptiles and Amphibians
DatasetName Herpetology
BasisOfRecord PreservedTissue
OccurrenceID URI:catalog:ROM:Reptiles and Amphibians:23100
CatalogNumber 23100
RecordNumber 77-1
RecordedBy Papenfuss, T.J.
Year 1977
Month 19770000
Day 1977
VerbatimEventDate Tissue only
Country North America; Mexico; Baja California Sur
StateProvince North America
County Mexico
Locality Baja California Sur
LocationRemarks La Paz
VerbatimCoordinates 24.1422222222222
VerbatimCoordinateSystem -110.310833333333
DecimalLatitude La Paz
GeoreferencedDate NAD27
GeoreferenceProtocol 2006-06-05
GeoreferenceSources not recorded
GeoreferenceVerificationStatus MaNIS/HerpNet/ORNIS Georeferencing Guidelines, GBIF Best Practices
GeoreferenceRemarks Cartografía Digital del Laboratorio de SIG'S y PR, Instituto de Geografía, UNAM. Incluye: INEGI, 2000; IMT,2000. Escala 1:250 000
IdentifiedBy Urosaurus
DateIdentified nigricaudus
ScientificName Unverified
Class Urosaurus nigricaudus
Order Animalia
Family Chordata
Genus Reptilia
SpecificEpithet Squamata
InfraspecificEpithet Iguanidae
bradmROM commented 10 years ago

This has been corrected in the original data and will be reflected on the next update

tucotuco commented 10 years ago

I see that the problem applies to at least one Bird record as well. Can you check all resources and let us know which ones should be reharvested?

tucotuco commented 10 years ago

OOps, here is the bird record in question http://portal.vertnet.org/o/rom/birds?id=01-10-4-848

bradmROM commented 10 years ago

Will do. Sitting on a bus in traffic. Pouring rain and hail.

Sent from Brad's Samsung Galaxy Mobile Note 3

-------- Original message --------
From: John Wieczorek
Date:2014-08-21 4:59 PM (GMT-05:00)
To: rom-vertnet/herpetology
Cc: Brad Millen
Subject: Re: [herpetology] [ROM Reptiles and Amphibians 23100] Unverified - Data field misalignment (#14)
bradmROM commented 10 years ago

Tell the truth. I wondered so replaced all data in record. I will replace all with the required data tomorrow morning with what it should be. Haven't done too bad with this since I finally had our IPT running with our bureaucratic islands at ROM. I am just that, an island in my office and any constructive criticism is welcome.

Will do so and let you know when populated with the required term and what resource(s) to poll.

Brad

Sent from Brad's Samsung Galaxy Mobile Note 3

bradmROM commented 10 years ago

Republished data due to Export Specs in Access being corrupted. for Herps , Birds Non Passeriformes and Passeriformes

http://gbif.rom.on.ca:8180/ipt/resource.do?r=herps http://gbif.rom.on.ca:8180/ipt/resource.do?r=birdsnonpass http://gbif.rom.on.ca:8180/ipt/resource.do?r=birdspass

Hopefully this will not happen again. Typical Microsoft Office Access Issue. Took a while this morning to figure it out.

John Wieczorek notifications@github.com 2014-08-21 4:59 PM >>> OOps, here is the bird record in question http://portal.vertnet.org/o/rom/birds?id=01-10-4-848

Reply to this email directly or view it on GitHub: https://github.com/rom-vertnet/herpetology/issues/14#issuecomment-52983726

bradmROM commented 10 years ago

I think they are still misaligned on output. I ran a harvest on them and they still look problematic. Can you check the archives? If the archives are off, I think the mapping needs to be done again from scratch. This can happen if you are connecting to a database to produce the archives and you insert a field somewhere in the mapping.

On Fri, Aug 22, 2014 at 5:36 PM, Brad Millen bradm@rom.on.ca wrote:

Republished data due to Export Specs in Access being corrupted. for Herps , Birds Non Passeriformes and Passeriformes

http://gbif.rom.on.ca:8180/ipt/resource.do?r=herps http://gbif.rom.on.ca:8180/ipt/resource.do?r=birdsnonpass http://gbif.rom.on.ca:8180/ipt/resource.do?r=birdspass

Hopefully this will not happen again. Typical Microsoft Office Access Issue. Took a while this morning to figure it out.

John Wieczorek notifications@github.com 2014-08-21 4:59 PM >>> OOps, here is the bird record in question http://portal.vertnet.org/o/rom/birds?id=01-10-4-848

Reply to this email directly or view it on GitHub: https://github.com/rom-vertnet/herpetology/issues/14#issuecomment-52983726

tucotuco commented 10 years ago

Latest published version fixed the problem.