job_sort_echos : meinfo.mat is written en each subject folder => this allows to add & remove subjects without re-running the job with par.redo
all jobs with auto_add_obj now works with par.sge => this allows to plan a complete workflow for cluster execution, while still using the objects
par.sge do not create a jobdir & append a line the workflow.sh when the joblist is empty
new function do_fsl_robust_mask_epi : combines do_fsl_mean & do_fsl_bet with specific parameters for EPI => this works well even with strong signal bias in the EPI images
serie.addVolume : can now use subdir regex to fetch volumes in the serie subdirs
cluster : par.mem = '2G' is now an authorized syntax => retro-compatibility is assured
help & typo : much better for all multi-echo functions
addVolume('root',fpath,tag) is the new syntax to avoid gfile & checks … => this is the way to add volumes that are not created yet, like when using par.sge workflow
getExam can now use another field for the research
Solving #43 and new features :
job_sort_echos:meinfo.matis written en each subject folder => this allows to add & remove subjects without re-running the job withpar.redoauto_add_objnow works withpar.sge=> this allows to plan a complete workflow for cluster execution, while still using the objectspar.sgedo not create a jobdir & append a line theworkflow.shwhen the joblist is emptydo_fsl_robust_mask_epi: combinesdo_fsl_mean&do_fsl_betwith specific parameters for EPI => this works well even with strong signal bias in the EPI imagesserie.addVolume: can now use subdir regex to fetch volumes in the serie subdirspar.mem = '2G'is now an authorized syntax => retro-compatibility is assuredaddVolume('root',fpath,tag)is the new syntax to avoid gfile & checks … => this is the way to add volumes that are not created yet, like when usingpar.sgeworkflowgetExamcan now use another field for the research