Closed f0ng1203 closed 4 years ago
Hi Fong,
I apologize for the long wait before replying. What you'll have to do is export the Seurat objects into a format that is compatible with Cerebro. You can find an example workflow here: https://romanhaa.github.io/cerebroApp/articles/cerebroApp_workflow.html
I hope that helps!
Best, Roman
Roman,
Thanks. I have managed to make it work.
Regards, Fong
Great!
Hi,
Thanks for the great app. I find it very useful to use your app. However, currently I am facing some issues with loading in files.
Based on your example, you load in 4 different H5 files which were produced by 10X Cell Ranger.
For me, I have a hashtag data. I proceeded to demultiplex it and currently I have one big seurat object with all the identifiers. I proceeded to break it down into 5 individual seurat objects (I have 5 groups) and I am lost here. I don't know how to load it into CerebroApp.
Could you offer some advice?
Thank you very much.
regards, Fong