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romanhaa / cerebroApp

R package containing the Cerebro application.
https://romanhaa.github.io/cerebroApp/
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How to deploy cerebroApp on Rconnect? #8

Closed centemians closed 3 years ago

centemians commented 5 years ago

Hi Roman, We are using cerebroApp in our project. We need to deploy this cerebroApp on Rconnect server? Could you please help me in this?

romanhaa commented 5 years ago

Hi! I would love to help you run cerebroApp through RStudio Connect. Unfortunately, I have neither experience with nor access to that service. How does it work? Can you specify what kind of problem you are running into? Best, Roman

centemians commented 5 years ago

Hi, Thanks for your reply. I have made some changes in the code since Rconnect needs app.R file. I have copied the code of launchCerebro.R in the app.R file and triggered launchCerebro() function in that file. Now I'm able to run CerebroApp using app.R file. When I'm deploying this app on the Rconnect, deployment gets halted because of unavailability of many packages. Where to find the list of all the packages used in this app? Thanks.

romanhaa commented 5 years ago

If you just install cerebroApp, all the dependencies should be installed along with it. Alternatively, you could check the file named DESCRIPTION in the main folder of this repo. In it, you will find a list of packages which are required by cerebroApp (Imports). The packages listed under Suggests are not necessary to launch the Cerebro interface but are required if one wants to run some analysis functions of cerebroApp, such as extractMonocleTrajectory().

romanhaa commented 3 years ago

Closing due to inactivity. Please re-open if this issue remains.