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romanhaa
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cerebroPrepare
R package containing functions to prepare single-cell transcriptomics data saved in a Seurat object for visualization in Cerebro, as well as perform few analytical procedures.
MIT License
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Load .crb file into R
#16
davisidarta
opened
5 years ago
1
Problem with getMostExpressedGenes
#15
vondoRishi
closed
4 years ago
4
Add capability to extract Monocle trajectories
#14
romanhaa
closed
5 years ago
0
Can't load any files into Cerebro app
#13
irmed
closed
5 years ago
4
Allow to provide custom marker gene table for `getEnrichedPathways()`
#12
romanhaa
opened
5 years ago
0
Update readme with getEnrichedPathways
#11
rpolicastro
closed
5 years ago
1
Error when running addPercentMtRibo
#10
rpolicastro
opened
5 years ago
0
Error with arguments in getMarkerGenes
#9
rpolicastro
closed
5 years ago
3
Check if parameters are NULL and complain if they are.
#8
romanhaa
opened
5 years ago
0
Export version of Seurat package.
#7
romanhaa
closed
5 years ago
0
Get MT and ribo gene lists from biomaRt?
#6
romanhaa
opened
5 years ago
0
Calculate nUMI and nGene if not present.
#5
romanhaa
opened
5 years ago
0
Make compatible with Seurat v3.
#4
romanhaa
opened
5 years ago
0
Save data in `@misc$cerebro` instead of `@misc`.
#3
romanhaa
opened
5 years ago
0
Store and export analysis parameters.
#2
romanhaa
opened
5 years ago
0
Add MSigDB hallmark lists to be tested in pathway enrichment.
#1
romanhaa
opened
5 years ago
0