romanhaa cerebroPrepare issues

romanhaa / cerebroPrepare

R package containing functions to prepare single-cell transcriptomics data saved in a Seurat object for visualization in Cerebro, as well as perform few analytical procedures.

MIT License

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issues

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Load .crb file into R

#16 davisidarta opened 5 years ago
1
Problem with getMostExpressedGenes

#15 vondoRishi closed 4 years ago
4
Add capability to extract Monocle trajectories

#14 romanhaa closed 5 years ago
0
Can't load any files into Cerebro app

#13 irmed closed 5 years ago
4
Allow to provide custom marker gene table for `getEnrichedPathways()`

#12 romanhaa opened 5 years ago
0
Update readme with getEnrichedPathways

#11 rpolicastro closed 5 years ago
1
Error when running addPercentMtRibo

#10 rpolicastro opened 5 years ago
0
Error with arguments in getMarkerGenes

#9 rpolicastro closed 5 years ago
3
Check if parameters are NULL and complain if they are.

#8 romanhaa opened 5 years ago
0
Export version of Seurat package.

#7 romanhaa closed 5 years ago
0
Get MT and ribo gene lists from biomaRt?

#6 romanhaa opened 5 years ago
0
Calculate nUMI and nGene if not present.

#5 romanhaa opened 5 years ago
0
Make compatible with Seurat v3.

#4 romanhaa opened 5 years ago
0
Save data in `@misc$cerebro` instead of `@misc`.

#3 romanhaa opened 5 years ago
0
Store and export analysis parameters.

#2 romanhaa opened 5 years ago
0
Add MSigDB hallmark lists to be tested in pathway enrichment.

#1 romanhaa opened 5 years ago
0