feature: VCF File Input Support

roohy / iLASH

iLASH - IBD Estimation Using Locality Sensitive Hashing

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feature: VCF File Input Support #9

Open pettyalex opened 1 year ago

pettyalex commented 1 year ago

Add basic VCF input support. This solution transposes the whole VCF in memory, and will use significant amounts of memory, about the size of the uncompressed ped.

WIP right now. This is not polished or ready to merge. I need to test more, and make sure that this is a sane design.

roohy commented 1 month ago

Do these new changes reduce the amount of memory required for loading VCFs? Is there anything I can do to help?