freezing after fs_upload

[jcolomb]

Hi. my R has a strange behavior. when I do a fs_upload to a file set, it does it (nothing unusual so far indeed). The problem is that about 5-10 sec later (without me doing anything), R freezes. (the file is uploaded and the > appears (meaning the function is closed?)

Does anyone has the problem. ( I am using R 3.0.2, on a macbook pro running OS 10.8.5), I will try to go into the problem later... Do you know if I can check what R is doing (while it is apparently not doing anything)? Other R functions I am using are working perfectly well...)

[cboettig]

Weird, never seen that. Happens regardless of the file set you are uploading? @karthikram ever seen this?

[jcolomb]

.. it seems I got the same problem with fs_create now. error: Your article has been created! Your id number is 829574

• About to connect() to api.figshare.com port 80 (#0)
• Trying 54.246.238.162

I created a file set article. I would guess the problem has something to do with OSX10.8.5, is there any python code involved? (the new os runs python 2.7 per default- and therefore do not run inkscape correctly....)

[jcolomb]

here is part of the crash report: Terminating app due to uncaught exception 'NSRangeException', reason: 'NSMutableRLEArray objectAtIndex:effectiveRange:: Out of bounds' abort() called terminate called throwing an exception

[jcolomb]

it may be linked with X11, seems to work better if I have XQuartz open (X11 is not starting automatically with quartz() for instance, of course X11 does not run on os 10.8.5!)... still testing to find a reason for this crazy behavior...

Update: this is another bug. I fixed that, but the rfigshare problem is still there

[jcolomb]

I try to get more info about the problem, it is apparently a os 10.8.5 problem. on a fs_add_author, R take 100% of CPU power, open this:

/Users/choupi/Desktop/boulot/FSdata /Applications/R.app/Contents/MacOS/R /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libR.dylib /System/Library/Frameworks/ExceptionHandling.framework/Versions/A/ExceptionHandling /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRblas.0.dylib /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib /Library/Frameworks/R.framework/Versions/3.0/Resources/modules/internet.so /Users/choupi/Library/Caches/org.R-project.R/Cache.db-shm /private/var/db/mds/messages/se_SecurityMessages /Users/choupi/Library/R/3.0/library/RJSONIO/libs/RJSONIO.so /Users/choupi/Library/R/3.0/library/XML/libs/XML.so /Users/choupi/Library/R/3.0/library/RCurl/libs/RCurl.so /Library/Frameworks/R.framework/Versions/3.0/Resources/library/tools/libs/tools.so /System/Library/Fonts/Keyboard.ttf /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/Resources/HIToolbox.rsrc /Users/choupi/Library/R/3.0/library/digest/libs/digest.so /Applications/R.app/Contents/Resources/quartzPP.tiff /Applications/R.app/Contents/Resources/miscPP.png /private/var/folders/6t/9xg5lpyw8xn40x006s7k4wsh0000gp/C/com.apple.LaunchServices-037502.csstore /System/Library/Fonts/Helvetica.dfont /Applications/R.app/Contents/Resources/colorsPP.tiff /usr/share/icu/icudt49l.dat /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/Resources/Extras2.rsrc /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/Resources/SArtFile.bin /Applications/R.app/Contents/Resources/Rdoc.icns /Applications/R.app/Contents/Resources/history.png /Applications/R.app/Contents/Resources/quit.png /System/Library/Fonts/LucidaGrande.ttc /System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/libcldcpuengine.dylib /Applications/R.app/Contents/Resources/stop.tiff /Applications/R.app/Contents/Resources/sourceR.tiff /Applications/R.app/Contents/Resources/quartz.tiff /Applications/R.app/Contents/Resources/Folding Bottom.png /Applications/R.app/Contents/Resources/Folding Top.png /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/Resources/English.lproj/Localized.rsrc /Users/choupi/Library/R/3.0/library/plyr/libs/plyr.so /System/Library/Fonts/Monaco.dfont /Applications/R.app/Contents/Resources/lock-locked.tiff /Applications/R.app/Contents/Resources/colors.tiff /Applications/R.app/Contents/Resources/emptyDoc.tiff /System/Library/ColorSync/Profiles/Generic CMYK Profile.icc /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/Resources/ArtFile.bin /Applications/R.app/Contents/Resources/SaveDocumentItemImage.tiff /System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/ImageFormats/unorm8_bgra.dylib /Library/Frameworks/R.framework/Versions/3.0/Resources/library/utils/libs/utils.so /Library/Frameworks/R.framework/Versions/3.0/Resources/library/translations/fr/LC_MESSAGES/R-base.mo /Library/Frameworks/R.framework/Versions/3.0/Resources/library/methods/libs/methods.so /Library/Frameworks/R.framework/Versions/3.0/Resources/library/translations/fr/LC_MESSAGES/R.mo /Library/Frameworks/R.framework/Versions/3.0/Resources/library/graphics/libs/graphics.so /System/Library/Keyboard Layouts/AppleKeyboardLayouts.bundle/Contents/Resources/AppleKeyboardLayouts-L.dat /Library/Frameworks/R.framework/Versions/3.0/Resources/library/grDevices/libs/grDevices.so /Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/libs/stats.so /System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/ImageFormats/unorm8_rgba.dylib /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRlapack.dylib /System/Library/Fonts/Times.dfont /System/Library/Fonts/Courier.dfont /usr/lib/dyld /private/var/db/dyld/dyld_shared_cache_x86_64 /dev/null ->0xffffff80173179f0 ->0xffffff8017317aa0 count=1, state=0x2 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/Resources/Extras2.rsrc /Users/choupi/Library/Caches/org.R-project.R/Cache.db /Users/choupi/Library/Caches/org.R-project.R/Cache.db /Users/choupi/Library/Caches/org.R-project.R/Cache.db-wal /Users/choupi/Library/Caches/org.R-project.R/Cache.db-shm /Users/choupi/Library/Caches/org.R-project.R/Cache.db-wal FNetwork.defaultStorageSession ->0xffffff8017317d60 ->0xffffff8017317940 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/Resources/HIToolbox.rsrc /Users/choupi/Library/Saved Application State/org.R-project.R.savedState/data.data /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/Resources/English.lproj/Localized.rsrc localhost:28683 ->0xaf225792c51c7c57 ->0xaf225792c51c8427 localhost:28683->localhost:50018 macbookpro-10ddb1f0ca31.fritz.box:50019->ec2-54-246-176-37.eu-west-1.compute.amazonaws.com:http ->0xaf225792c51c7937

[jcolomb]

sampling the CPR actions:

Sampling process 1023 for 3 seconds with 1 millisecond of run time between samples Sampling completed, processing symbols... Analysis of sampling R (pid 1023) every 1 millisecond Process: R [1023] Path: /Applications/R.app/Contents/MacOS/R Load Address: 0x100000000 Identifier: org.R-project.R Version: R 3.0.2 GUI 1.62 Snow Leopard build (6558) Code Type: X86-64 (Native) Parent Process: launchd [136]

Date/Time: 2013-10-25 22:42:02.259 +0200 OS Version: Mac OS X 10.8.5 (12F45) Report Version: 7

Call graph: 2405 Thread_37900 DispatchQueue_1: com.apple.main-thread (serial)

• 2405 start (in R) + 52 [0x1000017e4]
• 2405 main (in R) + 910 [0x100001b7e]
• 2405 -[REngine runREPL](in R) + 124 [0x10001379c]
• 2405 run_REngineRmainloop (in R) + 302 [0x10001f38e]
• 2405 R_ReplDLLdo1 (in libR.dylib) + 141 [0x1001d8a5d] main.c:337
• 2405 Re_ReadConsole (in R) + 190 [0x100012a7e]
• 2405 -[RController handleReadConsole:](in R) + 184 [0x10000bac8]
• 2405 -[RController doProcessEvents:](in R) + 204 [0x100005dbc]
• 2405 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:](in AppKit) + 128 [0x7fff8bd65df2]
• 2405 _DPSNextEvent (in AppKit) + 685 [0x7fff8bd66533]
• 2405 BlockUntilNextEventMatchingListInMode (in HIToolbox) + 62 [0x7fff90eb7ae3]
• 2405 ReceiveNextEventCommon (in HIToolbox) + 356 [0x7fff90eb7c52]
• 2405 RunCurrentEventLoopInMode (in HIToolbox) + 209 [0x7fff90eb7eb4]
• 2405 CFRunLoopRunSpecific (in CoreFoundation) + 290 [0x7fff8e8ab0e2]
• 2405 __CFRunLoopRun (in CoreFoundation) + 1826 [0x7fff8e8abc02]
• 2405 __CFRunLoopDoSource1 (in CoreFoundation) + 153 [0x7fff8e878a49]
• 2405 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION (in CoreFoundation) + 41 [0x7fff8e878d09]
• 2405 **CFMachPortPerform (in CoreFoundation) + 288 [0x7fff8e878e40]
• 2405 __NSFireMachPort (in Foundation) + 257 [0x7fff92269b15]
• 2405 -[NSConnection dispatchWithComponents:](in Foundation) + 53 [0x7fff9226a00f]
• 2405 -[NSConnection handlePortCoder:](in Foundation) + 895 [0x7fff9226a7dd]
• 2405 -[NSConnection handleRequest:sequence:](in Foundation) + 1378 [0x7fff92270651]
• 2405 -[NSConnection dispatchInvocation:](in Foundation) + 331 [0x7fff922715f3]
• 2405 -[NSInvocation invoke](in CoreFoundation) + 263 [0x7fff8e8fcf37]
• 2405 _invoking** (in CoreFoundation) + 140 [0x7fff8e8fd09c]
• 2405 _CF_forwarding_prep_0 (in CoreFoundation) + 232 [0x7fff8e8f7e18]
• 2405 forwarding (in CoreFoundation) + 775 [0x7fff8e8f8197]
• 2405 -[NSInvocation invokeWithTarget:](in CoreFoundation) + 57 [0x7fff8e8fd109]
• 2405 -[NSInvocation invoke](in CoreFoundation) + 263 [0x7fff8e8fcf37]
• 2405 invoking_ (in CoreFoundation) + 140 [0x7fff8e8fd09c]
• 2405 -[RController writeLogsWithBytes:length:type:](in R) + 208 [0x1000096f0]
• 2405 -[RController writeConsoleDirectly:withColor:](in R) + 909 [0x10000c49d]
• 2361 -[RController writeConsoleDirectly:withColor:](in R) + 2173 [0x10000c98d]
• ! 2361 -[NSTextView(NSSharing) setSelectedRanges:affinity:stillSelecting:](in AppKit) + 7342 [0x7fff8be1a56e]
• ! 2361 -[NSNotificationCenter postNotificationName:object:userInfo:](in Foundation) + 64 [0x7fff922027b6]
• ! 2361 _CFXNotificationPost (in CoreFoundation) + 2554 [0x7fff8e8bbeda]
• ! 2361 -[RController textViewDidChangeSelection:](in R) + 178 [0x100008cc2]
• ! 2361 -[NSString lineRangeForRange:](in Foundation) + 57 [0x7fff9234070f]
• ! 2361 CFStringGetLineBounds (in CoreFoundation) + 131 [0x7fff8e932a03]
• ! 2361 __CFStringGetLineOrParagraphBounds (in CoreFoundation) + 767,935,... [0x7fff8e932d0f,0x7fff8e932db7,...]
• 44 -[RController writeConsoleDirectly:withColor:](in R) + 2117 [0x10000c955]
• 44 -[NSTextStorage endEditing](in AppKit) + 79 [0x7fff8bceb1a4]
• 44 -[NSTextStorage processEditing](in AppKit) + 202 [0x7fff8be896c5]
• 44 -[NSTextStorage _notifyEdited:range:changeInLength:invalidatedRange:](in AppKit) + 154 [0x7fff8bde087a]
• 44 -[NSLayoutManager textStorage:edited:range:changeInLength:invalidatedRange:](in AppKit) + 406 [0x7fff8bde0a28]
• 43 -[NSTextView(NSSharing) setSelectedRanges:affinity:stillSelecting:](in AppKit) + 7342 [0x7fff8be1a56e]
• : 43 -[NSNotificationCenter postNotificationName:object:userInfo:](in Foundation) + 64 [0x7fff922027b6]
• : 43 _CFXNotificationPost (in CoreFoundation) + 2554 [0x7fff8e8bbeda]
• : 43 -[RController textViewDidChangeSelection:](in R) + 178 [0x100008cc2]
• : 43 -[NSString lineRangeForRange:](in Foundation) + 57 [0x7fff9234070f]
• : 43 CFStringGetLineBounds (in CoreFoundation) + 131 [0x7fff8e932a03]
• : 43 __CFStringGetLineOrParagraphBounds (in CoreFoundation) + 923,752,... [0x7fff8e932dab,0x7fff8e932d00,...]
• 1 -[NSTextView(NSSharing) setSelectedRanges:affinity:stillSelecting:](in AppKit) + 7316 [0x7fff8be1a554]
• 1 +[NSDictionary dictionaryWithObjectsAndKeys:](in CoreFoundation) + 1000 [0x7fff8e8e8ac8]
• 1 -[__NSPlaceholderDictionary initWithObjects:forKeys:count:](in CoreFoundation) + 289 [0x7fff8e8ce281]
• 1 +[NSDictionaryI new:::::](in CoreFoundation) + 545 [0x7fff8e997ca1]
• 1 -[NSObject retain](in libobjc.A.dylib) + 110 [0x7fff9023864e]
• 1 objc::DenseMap<objc_object, unsigned long, true, objc::DenseMapInfo<objc_object>, objc::DenseMapInfo >::FindAndConstruct(objc_object* const&) (in libobjc.A.dylib) + 32 [0x7fff9021fd16]
• 1 objc::DenseMap<objc_object, unsigned long, true, objc::DenseMapInfo<objc_object>, objc::DenseMapInfo >::LookupBucketFor(objc_object* const&, std::__1::pair<objc_object, unsigned long>&) const (in libobjc.A.dylib) + 109 [0x7fff9021fdb1] 2405 Thread_37928 DispatchQueue_2: com.apple.libdispatch-manager (serial)
• 2405 _dispatch_mgr_thread (in libdispatch.dylib) + 54 [0x7fff8a8e89ee]
• 2405 _dispatch_mgr_invoke (in libdispatch.dylib) + 883 [0x7fff8a8e8dea]
• 2405 kevent (in libsystem_kernel.dylib) + 10 [0x7fff91ce3d16] 2405 Thread_37938: com.apple.NSURLConnectionLoader
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 NSThreadmain__ (in Foundation) + 1345 [0x7fff9224f562]
• 2405 +[NSURLConnection(Loader) _resourceLoadLoop:](in Foundation) + 356 [0x7fff921f1546]
• 2405 CFRunLoopRunSpecific (in CoreFoundation) + 290 [0x7fff8e8ab0e2]
• 2405 **CFRunLoopRun (in CoreFoundation) + 1078 [0x7fff8e8ab916]
• 2405 __CFRunLoopServiceMachPort (in CoreFoundation) + 195 [0x7fff8e8a6233]
• 2405 mach_msg (in libsystem_kernel.dylib) + 70 [0x7fff91ce0c42]
• 2405 mach_msg_trap (in libsystem_kernel.dylib) + 10 [0x7fff91ce1686] 2405 Thread_37943
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 NSThreadmain** (in Foundation) + 1345 [0x7fff9224f562]
• 2403 -[RController readThread:](in R) + 548 [0x10000ddf4]
• ! 2403 __select (in libsystem_kernel.dylib) + 10 [0x7fff91ce3322]
• 2 -[RController readThread:](in R) + 347 [0x10000dd2b] 2405 Thread_39599: com.apple.CFSocket.private
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 __CFSocketManager (in CoreFoundation) + 1302 [0x7fff8e8eaf46]
• 2405 __select (in libsystem_kernel.dylib) + 10 [0x7fff91ce3322] 2405 Thread_39604: JavaScriptCore::BlockFree
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 WTF::wtfThreadEntryPoint(void_) (in JavaScriptCore) + 15 [0x7fff8eca025f]
• 2405 JSC::BlockAllocator::blockFreeingThreadMain() (in JavaScriptCore) + 90 [0x7fff8ec8abfa]
• 2405 WTF::ThreadCondition::timedWait(WTF::Mutex&, double) (in JavaScriptCore) + 118 [0x7fff8ea67b66]
• 2405 _pthread_cond_wait (in libsystem_c.dylib) + 869 [0x7fff90c26fb9]
• 2405 __psynch_cvwait (in libsystem_kernel.dylib) + 10 [0x7fff91ce30fa] 2405 Thread_39605: JavaScriptCore::Marking
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 WTF::wtfThreadEntryPoint(void_) (in JavaScriptCore) + 15 [0x7fff8eca025f]
• 2405 JSC::MarkStackThreadSharedData::markingThreadMain() (in JavaScriptCore) + 214 [0x7fff8ebed8b6]
• 2405 JSC::SlotVisitor::drainFromShared(JSC::SlotVisitor::SharedDrainMode) (in JavaScriptCore) + 212 [0x7fff8ebed9d4]
• 2405 _pthread_cond_wait (in libsystem_c.dylib) + 869 [0x7fff90c26fb9]
• 2405 __psynch_cvwait (in libsystem_kernel.dylib) + 10 [0x7fff91ce30fa] 2405 Thread_39606: JavaScriptCore::Marking
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 WTF::wtfThreadEntryPoint(void_) (in JavaScriptCore) + 15 [0x7fff8eca025f]
• 2405 JSC::MarkStackThreadSharedData::markingThreadMain() (in JavaScriptCore) + 214 [0x7fff8ebed8b6]
• 2405 JSC::SlotVisitor::drainFromShared(JSC::SlotVisitor::SharedDrainMode) (in JavaScriptCore) + 212 [0x7fff8ebed9d4]
• 2405 _pthread_cond_wait (in libsystem_c.dylib) + 869 [0x7fff90c26fb9]
• 2405 __psynch_cvwait (in libsystem_kernel.dylib) + 10 [0x7fff91ce30fa] 2405 Thread_39607: JavaScriptCore::Marking
• 2405 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1]
• 2405 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772]
• 2405 WTF::wtfThreadEntryPoint(void_) (in JavaScriptCore) + 15 [0x7fff8eca025f]
• 2405 JSC::MarkStackThreadSharedData::markingThreadMain() (in JavaScriptCore) + 214 [0x7fff8ebed8b6]
• 2405 JSC::SlotVisitor::drainFromShared(JSC::SlotVisitor::SharedDrainMode) (in JavaScriptCore) + 212 [0x7fff8ebed9d4]
• 2405 _pthread_cond_wait (in libsystem_c.dylib) + 869 [0x7fff90c26fb9]
• 2405 psynch_cvwait (in libsystem_kernel.dylib) + 10 [0x7fff91ce30fa] 2405 Thread_39745 DispatchQueue_6: com.apple.root.default-priority (concurrent) 2405 start_wqthread (in libsystem_c.dylib) + 13 [0x7fff90c0f191] 2405 _pthread_wqthread (in libsystem_c.dylib) + 404 [0x7fff90c24cdb] 2405 _dispatch_worker_thread2 (in libdispatch.dylib) + 304 [0x7fff8a8e71fa] 2405 _dispatch_client_callout (in libdispatch.dylib) + 8 [0x7fff8a8e60b6] 2405 _dispatch_call_block_and_release (in libdispatch.dylib) + 15 [0x7fff8a8e9f01] 2405 block_global_6 (in Foundation) + 129 [0x7fff922500f1] 2405 -[NSOperationInternal start](in Foundation) + 684 [0x7fff92248926] 2405 -[NSBlockOperation main](in Foundation) + 124 [0x7fff922729cf] 2405 __NSAppKitFinalizeThreadData_block_invoke_03384 (in AppKit) + 89 [0x7fff8bfb6975] 2405 -[NSObject(NSThreadPerformAdditions) performSelectorOnMainThread:withObject:waitUntilDone:](in Foundation) + 131 [0x7fff92246028] 2405 -[NSObject(NSThreadPerformAdditions) performSelector:onThread:withObject:waitUntilDone:modes:](in Foundation) + 796 [0x7fff922463c8] 2405 -[NSCondition wait](in Foundation) + 240 [0x7fff9224dc16] 2405 _pthread_cond_wait (in libsystem_c.dylib) + 869 [0x7fff90c26fb9] 2405 __psynch_cvwait (in libsystem_kernel.dylib) + 10 [0x7fff91ce30fa]

Total number in stack (recursive counted multiple, when >=5): 7 _pthread_start (in libsystem_c.dylib) + 327 [0x7fff90c22772] 7 thread_start (in libsystem_c.dylib) + 13 [0x7fff90c0f1a1] 5 __psynch_cvwait (in libsystem_kernel.dylib) + 0 [0x7fff91ce30f0] 5 _pthread_cond_wait (in libsystem_c.dylib) + 869 [0x7fff90c26fb9]

Sort by top of stack, same collapsed (when >= 5): psynch_cvwait (in libsystem_kernel.dylib) 12025 select (in libsystem_kernel.dylib) 4808 kevent (in libsystem_kernel.dylib) 2405 mach_msg_trap (in libsystem_kernel.dylib) 2405 __CFStringGetLineOrParagraphBounds (in CoreFoundation) 2404

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- ???) <91E31B9B-4141-36D5-ABDC-20F1D6D1D0CF> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff90e58000 - 0x7fff91188fff com.apple.HIToolbox (2.0 - ???) <656D08C2-9068-3532-ABDD-32EC5057CCB2> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox 0x7fff91189000 - 0x7fff912a2fff com.apple.ImageIO.framework (3.2.2 - 851) <6552C673-9F29-3B31-A12E-C4391A950965> /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO 0x7fff912a3000 - 0x7fff91302fff com.apple.AE (645.6 - 645.6) <44F403C1-660A-3543-AB9C-3902E02F936F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE 0x7fff91303000 - 0x7fff9140efff libFontParser.dylib (??? - ???) <96C42E49-79A6-3475-B5E4-6A782599A6DA> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib 0x7fff91503000 - 0x7fff91503fff com.apple.Cocoa (6.7 - 19) <1F77945C-F37A-3171-B22E-F7AB0FCBB4D4> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa 0x7fff9150c000 - 0x7fff915e6fff com.apple.backup.framework (1.4.3 - 1.4.3) <6B65C44C-7777-3331-AD9D-438D10AAC777> /System/Library/PrivateFrameworks/Backup.framework/Versions/A/Backup 0x7fff915e7000 - 0x7fff9189eff7 com.apple.MediaToolbox (1.0 - 926.106) <57043584-98E7-375A-89AE-F46480AA5D97> /System/Library/Frameworks/MediaToolbox.framework/Versions/A/MediaToolbox 0x7fff9189f000 - 0x7fff91920fff com.apple.Metadata (10.7.0 - 707.12) <69E3EEF7-8B7B-3652-8320-B8E885370E56> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata 0x7fff91936000 - 0x7fff9193cfff libCGXCoreImage.A.dylib (600.0.0 - compatibility 64.0.0) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXCoreImage.A.dylib 0x7fff9193d000 - 0x7fff91954fff libGL.dylib (??? - ???) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff91955000 - 0x7fff91964fff com.apple.opengl (1.8.10 - 1.8.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff9196a000 - 0x7fff91a5ffff libiconv.2.dylib (7.0.0 - compatibility 7.0.0) /usr/lib/libiconv.2.dylib 0x7fff91b30000 - 0x7fff91b38ff7 libsystem_dnssd.dylib (??? - ???) /usr/lib/system/libsystem_dnssd.dylib 0x7fff91b39000 - 0x7fff91b6ffff libsystem_info.dylib (??? - ???) <4FFCA242-7F04-365F-87A6-D4EFB89503C1> /usr/lib/system/libsystem_info.dylib 0x7fff91bf3000 - 0x7fff91c12ff7 libresolv.9.dylib (??? - ???) <0882DC2D-A892-31FF-AD8C-0BB518C48B23> /usr/lib/libresolv.9.dylib 0x7fff91c13000 - 0x7fff91c3ffff com.apple.framework.Apple80211 (8.5 - 850.252) <73506CA1-CF76-3A98-A6F2-3DDAC10CB67A> /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211 0x7fff91c40000 - 0x7fff91c88fff libcurl.4.dylib (7.0.0 - compatibility 7.0.0) /usr/lib/libcurl.4.dylib 0x7fff91c89000 - 0x7fff91c9cff7 libbsm.0.dylib (??? - ???) /usr/lib/libbsm.0.dylib 0x7fff91ca2000 - 0x7fff91cd0fff com.apple.CoreServicesInternal (154.3 - 154.3) /System/Library/PrivateFrameworks/CoreServicesInternal.framework/Versions/A/CoreServicesInternal 0x7fff91cd1000 - 0x7fff91cecff7 libsystem_kernel.dylib (2050.48.12 - compatibility 1.0.0) <4B7993C3-F62D-3AC1-AF92-414A0D6EED5E> /usr/lib/system/libsystem_kernel.dylib 0x7fff91ced000 - 0x7fff91ceffff com.apple.TrustEvaluationAgent (2.0 - 23) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent 0x7fff91cf0000 - 0x7fff91cf3fff com.apple.help (1.3.2 - 42) <343904FE-3022-3573-97D6-5FE17F8643BA> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help 0x7fff91cf9000 - 0x7fff91cfbff7 libunc.dylib (25.0.0 - compatibility 1.0.0) <92805328-CD36-34FF-9436-571AB0485072> /usr/lib/system/libunc.dylib 0x7fff91d08000 - 0x7fff91d54ff7 libauto.dylib (??? - ???) /usr/lib/libauto.dylib 0x7fff91d90000 - 0x7fff91dc8fff libtidy.A.dylib (??? - ???) <9009156B-84F5-3781-BFCB-B409B538CD18> /usr/lib/libtidy.A.dylib 0x7fff91ea3000 - 0x7fff91ea6fff libRadiance.dylib (??? - ???) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib 0x7fff91ea7000 - 0x7fff91eddfff com.apple.DebugSymbols (98 - 98) <14E788B1-4EB2-3FD7-934B-849534DFC198> /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols 0x7fff91ede000 - 0x7fff91edffff liblangid.dylib (??? - ???) <864C409D-D56B-383E-9B44-A435A47F2346> /usr/lib/liblangid.dylib 0x7fff91eeb000 - 0x7fff91ef1fff com.apple.DiskArbitration (2.5.2 - 2.5.2) /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration 0x7fff9201d000 - 0x7fff92076ff7 com.apple.ImageCaptureCore (5.0.4 - 5.0.4) <84F003C2-5758-3D0A-8644-F3A0BA4F22FC> /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore 0x7fff92078000 - 0x7fff92095ff7 com.apple.openscripting (1.3.6 - ???) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting 0x7fff92096000 - 0x7fff92193ff7 libxml2.2.dylib (10.8.0 - compatibility 10.0.0) <47B09CB2-C636-3024-8B55-6040F7829B4C> /usr/lib/libxml2.2.dylib 0x7fff92194000 - 0x7fff921b6ff7 com.apple.Kerberos (2.0 - 1) /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos 0x7fff921b7000 - 0x7fff921b8fff libsystem_blocks.dylib (59.0.0 - compatibility 1.0.0) /usr/lib/system/libsystem_blocks.dylib 0x7fff921b9000 - 0x7fff92518fff com.apple.Foundation (6.8 - 945.18) <1D7E58E6-FA3A-3CE8-AC85-B9D06B8C0AA0> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation 0x7fff92519000 - 0x7fff92794ff7 com.apple.RawCamera.bundle (4.09 - 711) <0040632D-09A9-32DE-98E8-BFA99F9F6526> /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera 0x7fff927b0000 - 0x7fff9295efff com.apple.QuartzCore (1.8 - 304.3) /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore 0x7fff92989000 - 0x7fff9298bfff libCVMSPluginSupport.dylib (??? - ???) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff9298c000 - 0x7fff9298ffff com.apple.AppleSystemInfo (2.0 - 2) /System/Library/PrivateFrameworks/AppleSystemInfo.framework/Versions/A/AppleSystemInfo Sample analysis of process 1023 written to file /dev/stdout

[jcolomb]

I tried to upload to os 10.9, which runs python 2.7.5. No difference, it make changes on figshare but then use all CPU power and freeze.

[cboettig]

Can anyone replicate this error? if so, feel free to re-open.