To enable users to make their own decisions about how to code and how to count polymorphic and uncertain character states in downstream analysis, should provide an API along the following capabilities:
is_polymorphic() and is_uncertain(): predicate functions, would return a TRUE/FALSE matrix in the same arrangement as the character matrix.
This is carved out from #172. Originally this included the ability to include member states as well, which is now moved to #187.
To enable users to make their own decisions about how to code and how to count polymorphic and uncertain character states in downstream analysis, should provide an API along the following capabilities:
is_polymorphic()andis_uncertain(): predicate functions, would return a TRUE/FALSE matrix in the same arrangement as the character matrix.This is carved out from #172. Originally this included the ability to include member states as well, which is now moved to #187.