taxize_nexml() fails to call use_entrez()

ropensci / RNeXML

Implementing semantically rich NeXML I/O in R

https://docs.ropensci.org/RNeXML

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Closed hlapp closed 5 years ago

hlapp commented 5 years ago

The vignette metadata.Rmd generates a ton of warnings about the following:

No ENTREZ API key provided
 Get one via use_entrez()

This problem is unfortunately usually concealed, because it somehow goes away when the phytools package is installed.

hlapp commented 5 years ago

Apparently the user needs to obtain the API key, the code cannot do this automatically.