ropensci / RNeXML

Implementing semantically rich NeXML I/O in R
https://docs.ropensci.org/RNeXML
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Warning message: select_() is deprecated as of dplyr 0.7.0 #250

Closed wdahdul closed 1 year ago

wdahdul commented 3 years ago

Hello, I'm reporting this warning message related to RNeXML:

> nexml_ontotrace <- pk_get_ontotrace(nexml)
Warning message:
`select_()` is deprecated as of dplyr 0.7.0.
Please use `select()` instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated. 
> lifecycle::last_warnings()
[[1]]
<deprecated>
message: `select_()` is deprecated as of dplyr 0.7.0.
Please use `select()` instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
backtrace:
  1. rphenoscape::pk_get_ontotrace(nexml)
  2. RNeXML::get_characters(...)
  6. RNeXML::get_level(nex, "otus/otu")
  4. recursion(1, lvl)(nex)
 12. dplyr::select_(., quote(-nexml))
 16. dplyr:::lazy_deprec("select", hint = FALSE)
> sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rphenoscape_0.2.15

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.4.6     xml2_1.3.2       magrittr_1.5     uuid_0.1-4       tidyselect_1.1.0 ape_5.3          lattice_0.20-41 
 [8] R6_2.4.1         rlang_0.4.8      stringr_1.4.0    httr_1.4.1       plyr_1.8.6       dplyr_1.0.2      tools_4.0.2     
[15] parallel_4.0.2   RNeXML_2.4.3     grid_4.0.2       nlme_3.1-148     ellipsis_0.3.0   lazyeval_0.2.2   tibble_3.0.1    
[22] lifecycle_0.2.0  crayon_1.3.4     tidyr_1.0.2      purrr_0.3.4      reshape2_1.4.4   vctrs_0.3.4      curl_4.3        
[29] glue_1.4.0       stringi_1.4.6    compiler_4.0.2   pillar_1.4.4     generics_0.0.2   XML_3.99-0.3     jsonlite_1.6.1  
[36] pkgconfig_2.0.3