it might be beyond the scope of the manuscript but there are some nice possibilities for phylobase and RNeXML to interact. As phylobase provides classes that store together trees + data (and has a slot to store metadata), there are definitely some interesting possibilities to pass data around.
Original comment:
it might be beyond the scope of the manuscript but there are some nice possibilities for phylobase and RNeXML to interact. As phylobase provides classes that store together trees + data (and has a slot to store metadata), there are definitely some interesting possibilities to pass data around.