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ropensci / UCSCXenaTools

:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
https://docs.ropensci.org/UCSCXenaTools
GNU General Public License v3.0
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一个450K芯片的cg位点在多个TCGA肿瘤的pattern #39

Closed iamhealthy closed 5 months ago

iamhealthy commented 8 months ago

王诗翔，你好：我想看来自450K芯片的具体1个cg位点在多个TCGA肿瘤的beta value模式，有高效的策略吗？像下面这个图(PMID: PMID: 35790732，Fig S1b)。非常感谢。

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github-actions[bot] commented 8 months ago

Thanks for reporting, Shixiang will reply as soon as possible:)

ShixiangWang commented 8 months ago

@iamhealthy 单个位点的数据展示目前我们还不支持。

@lishensuo 你帮我确定下哈

iamhealthy commented 8 months ago

谢谢。期待有解决方案啊:-)。在在线xena browser网页，倒是可以看/下载单个cg位点在具体一个肿瘤(tumor vs. control)的beta value。但如果想看该位点在多个肿瘤的变化，难道要一个肿瘤一个肿瘤的手动操作？如果是要分别看5位点cg位点，更麻烦。:-)。谢谢~~

ShixiangWang commented 5 months ago

这个我们已经实现按单个甲基化水平在泛瘤种的表达了。具体有问题再交流

ShixiangWang commented 5 months ago
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