Recent data updates from UCSCXena

[ShixiangWang]

devtools::load_all(".")

data_old = XenaData
data_new = XenaDataUpdate(saveTolocal = FALSE)

diff_new = dplyr::setdiff(
    data_new[, 1:4],
    data_old[, 1:4]
)

diff_old = dplyr::setdiff(
    data_old[, 1:4],
    data_new[, 1:4]
)

table(diff_old$XenaHosts)
table(diff_new$XenaHosts)

> table(diff_old$XenaHosts)

          https://gdc.xenahubs.net https://singlecellnew.xenahubs.net 
                               401                                 71 
> table(diff_new$XenaHosts)

              https://gdc.xenahubs.net https://xena.treehouse.gi.ucsc.edu:443 
                                   733                                      5 

GDC 改变

以单个队列为参考

• 对数据进行了系统的更新，UCSCXenaShiny 涉及的数据和函数需要进行相应更新设计。

old:

new:

https://singlecellnew.xenahubs.net

这个 hub 好像是被撤销了（或者是隐藏了，公共无法再访问）

treehouse

新增了 5 个（clin表型）数据集，影响不大

[ShixiangWang]

探索和更新确定下：

• https://xenabrowser.net/datapages/?host=https%3A%2F%2FgdcV18.xenahubs.net&removeHub=https%3A%2F%2Fgdc.xenahubs.net

https://github.com/openbiox/UCSCXenaShiny/issues/359

[ShixiangWang]

close it as the latest commit https://github.com/ropensci/UCSCXenaTools/commit/2f1742d131d3c2515356c8e5ed2c88c2e4f4652a