Two sequences with different length found

ropensci / babette

babette is an R package to work with BEAST2

https://docs.ropensci.org/babette

GNU General Public License v3.0

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Two sequences with different length found #95

Closed richelbilderbeek closed 3 years ago

richelbilderbeek commented 3 years ago

Follow-up from #93 and #94.

issue_128.txt

Error 110 parsing the xml input file

validate and intialize error: Two sequences with different length found: 78 != 79

Error detected about here:
  <beast>
      <data id='THAILAND_TEST.clust_1.dated' name='alignment'>

richelbilderbeek commented 3 years ago

Hmm, taking a look at the sequences, I see indeed that this error is correct:

Screenshot from 2021-03-22 15-04-55

richelbilderbeek commented 3 years ago

Was caused by AAs in DNA sequence, fixed with https://github.com/ropensci/beautier/commit/277bc516ca46ba46b83393eb519a657b70818ec6