Closed ryandkuster closed 1 year ago
COX1 is the default database and works if no db is specified, but when manually specifying the db as "COX1" as follows:
bold_identify(sequences = df$seqs, db="COX1")
this error returns:
Error: 'cox1' is not a valid db Choices are 'COX1', 'COX1_SPECIES', 'COX1_SPECIES_PUBLIC' or 'COX1_L640bp'
I think the "b_get_db" function in utils_assert.R returns "COX1" as lowercase, which then fails in the "b_validate" check.
Using the other database arguments appears to work correctly with no errors.
Thanks!
Thanks for spotting that! Should be fixed now.
COX1 is the default database and works if no db is specified, but when manually specifying the db as "COX1" as follows:
this error returns:
I think the "b_get_db" function in utils_assert.R returns "COX1" as lowercase, which then fails in the "b_validate" check.
Using the other database arguments appears to work correctly with no errors.
Thanks!