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ropensci / bold

Interface to the Bold Systems barcode webservice
https://docs.ropensci.org/bold
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Failing installing bold package #99

Closed Natacha66 closed 10 months ago

Natacha66 commented 10 months ago

Hello,

I am trying to install bold package on R studio (version 4.0.4) however I am receiving the message below and can't find how to fix the problem. (I get the same problem when trying remotes::install_github("ropensci/bold"). thank you for your help.

install.packages("bold") Installing package into ‘C:/Users/natac/Documents/R/win-library/4.0’ (as ‘lib’ is unspecified)

There is a binary version available but the source version is later: binary source needs_compilation bold 1.2.0 1.3.0 FALSE

installing the source package ‘bold’

trying URL 'https://cran.rstudio.com/src/contrib/bold_1.3.0.tar.gz' Content type 'application/x-gzip' length 2030481 bytes (1.9 MB) downloaded 1.9 MB

salix-d commented 10 months ago

I think I see the problem: At line 43 in the file 'bold_identify_taxonomy.R' I used \(x) instead of function(x). My bad ^^'

I've just fix the github version (and check if there was other cases of that; it seems to be the only one). Can you retry installing with remotes::install_github("ropensci/bold")?

salix-d commented 10 months ago

package 'bold' correctement décompressé et sommes MD5 vérifiées

En passant, je parle aussi français si c'est plus facile 🙂

Natacha66 commented 10 months ago

Salut Salix,

Merci beaucoup pour ta réponse rapide 😊 J’ai réessayé mais même pb mais avec une autre fonction cette fois:/

Installing package into ‘C:/Users/natac/Documents/R/win-library/4.0’ (as ‘lib’ is unspecified)

Désolée de t’embêter.

Natacha

Here is my new mail: @. @*.**@*.***> will be deleted from july 31st.

Dr. Natacha Roux Post doctoral researcher Computational Neuroethology unit Okinawa Institute of Science and Technology (OIST) 1919-1 Tancha, Onna-son, Okinawa, 904-0495 Japan https://groups.oist.jp/cne

De : Salix @.> Envoyé : jeudi 7 septembre 2023 01:09 À : ropensci/bold @.> Cc : Natacha Roux @.>; Author @.> Objet : Re: [ropensci/bold] Failing installing bold package (Issue #99)

package 'bold' correctement décompressé et sommes MD5 vérifiées

En passant, je parle aussi français si c'est plus facile 🙂

— Reply to this email directly, view it on GitHubhttps://github.com/ropensci/bold/issues/99#issuecomment-1709239785, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATJBSTNUK33FOJIWH4YBOUDXZD67BANCNFSM6AAAAAA4NHV7DY. You are receiving this because you authored the thread.Message ID: @.**@.>>

salix-d commented 10 months ago

Okay je vais corriger ça et revérifier être sûr que y'en a plus d'autre.

Désolée de t’embêter.

Mais non! je suis là pour ça 🙂 (et c'est ma faute de toute façon 😆)

salix-d commented 10 months ago

Finalement, y'en avait 4 autres ^^'

Mais là, ça devrait marcher 🤞

Natacha66 commented 10 months ago

ça marche !!!!!! 😃

merci beaucoup !!!!

Here is my new mail: @. @*.**@*.***> will be deleted from july 31st.

Dr. Natacha Roux Post doctoral researcher Computational Neuroethology unit Okinawa Institute of Science and Technology (OIST) 1919-1 Tancha, Onna-son, Okinawa, 904-0495 Japan https://groups.oist.jp/cne

De : Salix @.> Envoyé : vendredi 8 septembre 2023 21:52 À : ropensci/bold @.> Cc : Natacha Roux @.>; Author @.> Objet : Re: [ropensci/bold] Failing installing bold package (Issue #99)

Finalement, y'en avait 4 autres ^^'

Mais là, ça devrait marcher 🤞

— Reply to this email directly, view it on GitHubhttps://github.com/ropensci/bold/issues/99#issuecomment-1712153232, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATJBSTIN3VJKNBM6PBDCCC3XZNZMPANCNFSM6AAAAAA4NHV7DY. You are receiving this because you authored the thread.Message ID: @.**@.>>