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ropensci / chromer

package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/
https://docs.ropensci.org/chromer
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Error in chrom_counts_single #27

Closed lucaslima1618 closed 5 years ago

lucaslima1618 commented 5 years ago

Hi,

Chromer is not working for while, it keeps given this error mensage:

Error in chrom_counts_single(x, rank, out, foptions = foptions) : Internal Server Error (HTTP 500).

What should I do to fix this issue?

thanks

orchid00 commented 5 years ago

Hi Lucas @lucaslima1618, I've recently became maintainer of chrome. I'll see what I can do to fix the problem. I'm just seeing this issue and my guess is a conflict with the R version. Would please let me know which version you are using? You can type version in the console and you will know. Thanks!

lucaslima1618 commented 5 years ago

Hi Paula,

Thanks for help me. My R version is 3.5.3 (2019-03-11).

Kind regards,

On Wed, Mar 27, 2019 at 6:51 PM Paula Andrea Martinez < notifications@github.com> wrote:

Hi Lucas, I've recently became maintainer old chrome. I'll see what I can do to fix the problem. I'm just seeing this issue and my guess is a conflict with the R version. Would please let me know which version you are using? You can type version in the console and you will know. Thanks!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/ropensci/chromer/issues/27#issuecomment-477361347, or mute the thread https://github.com/notifications/unsubscribe-auth/Auh4tAhiTgv1twj7lyS10xI3YYpUm49qks5va-fmgaJpZM4cBBcH .

orchid00 commented 5 years ago

Thanks @lucaslima1618 R version 3.5.3 is a major release is likely to have changed many things. Are you able to provide me with a reproducible example so I can check it for you?

orchid00 commented 5 years ago

I think I found the problem

Services http://ccdb.tau.ac.il/services/countsFull/?genus=Aloe&format=json

Returns this error:

NotImplementedError at /services/countsFull/ request.QUERY_PARAMS has been deprecated in favor of request.query_params since version 3.0, and has been fully removed as of version 3.2.

orchid00 commented 5 years ago

i've contacted Itay from CCDB

orchid00 commented 5 years ago

@lucaslima1618 the problem has been solved.