Report building fails when run from an rmarkdown or quarto document

[phuongquan]

When running daiquiri_report() or report_data() from an rmd/qmd file, get errors such as:

Duplicate chunk label 'unnamed-chunk-1'

or

Duplicate chunk label 'setup'

This appears to have started happening with version 1.0.2, which was updated to fix CRAN errors in Debian systems (6d5ddd77013d25d56efe3f7b6fcd5d5c0e90760f)

UPDATE: Version 1.0.3 partially solves this issue in that unlabelled chunks in a parent rmd/qmd file no longer cause an error, but a chunk labelled setup will still result in an error.

UPDATE: Version 1.1.1 now allows a chunk labelled setup in a parent rmd/qmd file without causing an error.

Current workarounds are:

• in the parent rmd/qmd file, rename any chunks that are mentioned in the error with a unique label
• in the parent rmd/qmd file, add options(knitr.duplicate.label = "allow") to a chunk at the top (see also https://bookdown.org/yihui/rmarkdown-cookbook/duplicate-label.html)
• create reports from simple R scripts instead of rmd/qmd files

[phuongquan]

@Analect is this the issue you were getting?