Closed trangdata closed 2 years ago
massimoaria
commented
2 years ago the file as is will not work in bibliometrix. Bibliometrix needs the rownames and the SR field to work properly. This information is used as short labels of papers in many analyses.
trangdata
commented
2 years ago Got it. We'll leave this for now.
massimoaria
commented
2 years ago I am working on this issue. Give me a few minutes...
massimoaria
commented
2 years ago Last commit should have solved the issue.
library(openalexR) library(bibliometrix) library(dplyr) dat <- oa2bibliometrix(oa_fetch( entity = "works", cites = "W2755950973", from_publication_date = "2022-01-01", to_publication_date = "2022-01-31" ))
dat %>% biblioAnalysis() %>% summary()
`MAIN INFORMATION ABOUT DATA
Timespan 2022 : 2022 Sources (Journals, Books, etc) 98 Documents 112 Annual Growth Rate % 0 Document Average Age 0 Average citations per doc 0.9107 Average citations per year per doc 0.9107 References 7367
DOCUMENT TYPES
book-chapter 19
journal-article 93
DOCUMENT CONTENTS Keywords Plus (ID) 382 Author's Keywords (DE) 0
AUTHORS Authors 413 Author Appearances 426 Authors of single-authored docs 11
AUTHORS COLLABORATION Single-authored docs 11 Documents per Author 0.271 Co-Authors per Doc 3.8 International co-authorships % 40.18
Annual Scientific Production
Year Articles 2022 112
Annual Percentage Growth Rate 0
Most Productive Authors
Authors Articles Authors Articles Fractionalized1 ALHAMZAH ALNOOR 2 VIJAY PEREIRA 1.5 2 CARLOS FRANCISCO SIMÕES GOMES 2 ANTON PEEZ 1.0 3 IGOR PINHEIRO DE ARAÚJO COSTA 2 ARAS BOZKURT 1.0 4 KANWALJEET GARG 2 ATIK KULAKLI 1.0 5 MARCOS DOS SANTOS 2 DIEUDONNÉ TCHUENTE 1.0 6 MATTI TEDRE 2 EVANDRO EDUARDO BRODAY 1.0 7 MAYARA LUSTOSA DE OLIVEIRA BARBOSA 2 JULIÁN DAVID CORTÉS SÁNCHEZ 1.0 8 MOHAMMED SAQR 2 MARCO SCHIRONE 1.0 9 STEFANO ZA 2 METEHAN FERIDUN SORKUN 1.0 10 VIJAY PEREIRA 2 RAYEES FAROOQ 1.0
Top manuscripts per citations
Paper DOI TC TCperYear NTC1 PAOLO BIANCONE, 2022, BRITISH FOOD JOURNAL 6 6 6.59 2 SANDIP MUKHOPADHYAY, 2022, JOURNAL OF HOSPITALITY AND TOURISM INSIGHTS 6 6 6.59 3 GUSTAVO FÜHR HARTMANN, 2022, ENVIRONMENTAL POLLUTION 5 5 5.49 4 KANWALJEET GARG, 2022, WORLD NEUROSURGERY 5 5 5.49 5 CHRISTOPHER MARTIN MIKKELSEN COX, 2022, INFANCY 4 4 4.39 6 DOMINIK FRANJO DOMINKOVIĆ, 2022, RENEWABLE & SUSTAINABLE ENERGY REVIEWS 4 4 4.39 7 GIANVITO SCARINGI, 2022, GEOMORPHOLOGY 4 4 4.39 8 JING WANG, 2022, TECHNOLOGY ANALYSIS & STRATEGIC MANAGEMENT 4 4 4.39 9 YONG QIN, 2022, RENEWABLE & SUSTAINABLE ENERGY REVIEWS 3 3 3.29 10 VIMMY BAJAJ, 2022, RESEARCH IN INTERNATIONAL BUSINESS AND FINANCE 3 3 3.29
Corresponding Author's Countries
Country Articles Freq SCP MCP MCP_Ratio1 CHINA 10 0.1282 6 4 0.400 2 INDIA 10 0.1282 7 3 0.300 3 BRAZIL 6 0.0769 5 1 0.167 4 ITALY 5 0.0641 2 3 0.600 5 SOUTH AFRICA 5 0.0641 2 3 0.600 6 MALAYSIA 4 0.0513 0 4 1.000 7 AUSTRALIA 3 0.0385 1 2 0.667 8 COLOMBIA 3 0.0385 3 0 0.000 9 USA 3 0.0385 2 1 0.333 10 CANADA 2 0.0256 1 1 0.500
SCP: Single Country Publications
MCP: Multiple Country Publications
Total Citations per Country
Country Total Citations Average Article Citations1 INDIA 18 1.800 2 CHINA 11 1.100 3 BRAZIL 9 1.500 4 MALAYSIA 8 2.000 5 ITALY 6 1.200 6 CZECH REPUBLIC 4 4.000 7 DENMARK 4 4.000 8 USA 4 1.333 9 AUSTRALIA 3 1.000 10 ISRAEL 2 2.000
Most Relevant Sources
Sources Articles1 IEEE ACCESS 5 2 ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH 3 3 SUSTAINABILITY 3 4 FRONTIERS IN PUBLIC HEALTH 2 5 LANDSCAPE ECOLOGY 2 6 LECTURE NOTES IN INFORMATION SYSTEMS AND ORGANISATION 2 7 LECTURE NOTES IN NETWORKS AND SYSTEMS 2 8 PROCEDIA COMPUTER SCIENCE 2 9 RENEWABLE & SUSTAINABLE ENERGY REVIEWS 2 10 ADMINISTRATIVE SCIENCES 1`
trangdata
commented
2 years ago hmm I downloaded the latest version of bibliometrix on cran and pulled the latest commit of openalexR and still got an error:
library(openalexR)
library(bibliometrix)
#> To cite bibliometrix in publications, please use:
#>
#> Aria, M. & Cuccurullo, C. (2017) bibliometrix: An R-tool for comprehensive science mapping analysis,
#> Journal of Informetrics, 11(4), pp 959-975, Elsevier.
#>
#>
#> https://www.bibliometrix.org
#>
#>
#> For information and bug reports:
#> - Send an email to info@bibliometrix.org
#> - Write a post on https://github.com/massimoaria/bibliometrix/issues
#>
#> Help us to keep Bibliometrix free to download and use by contributing with a small donation to support our research team (https://bibliometrix.org/donate.html)
#>
#>
#> To start with the shiny web-interface, please digit:
#> biblioshiny()
library(dplyr)
#>
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#>
#> filter, lag
#> The following objects are masked from 'package:base':
#>
#> intersect, setdiff, setequal, union
packageVersion("bibliometrix")
#> [1] '4.0.0'
dat <- oa2bibliometrix(oa_fetch(
entity = "works",
cites = "W2755950973",
from_publication_date = "2022-01-01",
to_publication_date = "2022-01-31"
))
dat %>%
biblioAnalysis()
#> Error in aggregate.data.frame(as.data.frame(x), ...): no rows to aggregateCreated on 2022-09-11 with reprex v2.0.2
massimoaria
commented
2 years ago Please use the GitHub version of bibliometrix:
library(openalexR) remotes::install_github("massimoaria/bibliometrix") library(bibliometrix)
trangdata
commented
2 years ago hmm I downloaded the bibliometrix package (v4.0.1) from GitHub but still get the same error...
massimoaria
commented
2 years ago I don't know why. I also tried using the bibliometrix last updated version from CRAN (4.0.1). The example seems to work fine. Here the code and output through repex:
library(openalexR)
library(bibliometrix)
#> To cite bibliometrix in publications, please use:
#>
#> Aria, M. & Cuccurullo, C. (2017) bibliometrix: An R-tool for comprehensive science mapping analysis,
#> Journal of Informetrics, 11(4), pp 959-975, Elsevier.
#>
#>
#> https://www.bibliometrix.org
#>
#>
#> For information and bug reports:
#> - Send an email to info@bibliometrix.org
#> - Write a post on https://github.com/massimoaria/bibliometrix/issues
#>
#> Help us to keep Bibliometrix free to download and use by contributing with a small donation to support our research team (https://bibliometrix.org/donate.html)
#>
#>
#> To start with the shiny web-interface, please digit:
#> biblioshiny()
library(dplyr)
#>
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#>
#> filter, lag
#> The following objects are masked from 'package:base':
#>
#> intersect, setdiff, setequal, union
dat <- oa_fetch(
entity = "works",
cites = "W2755950973",
from_publication_date = "2022-01-01",
to_publication_date = "2022-01-31"
) %>% oa2bibliometrix()
res <- biblioAnalysis(dat)
summary(res)
#>
#>
#> MAIN INFORMATION ABOUT DATA
#>
#> Timespan 2022 : 2022
#> Sources (Journals, Books, etc) 104
#> Documents 120
#> Annual Growth Rate % 0
#> Document Average Age 0
#> Average citations per doc 1.042
#> Average citations per year per doc 1.042
#> References 7530
#>
#> DOCUMENT TYPES
#> book-chapter 24
#> journal-article 94
#> proceedings-article 2
#>
#> DOCUMENT CONTENTS
#> Keywords Plus (ID) 418
#> Author's Keywords (DE) 0
#>
#> AUTHORS
#> Authors 437
#> Author Appearances 455
#> Authors of single-authored docs 12
#>
#> AUTHORS COLLABORATION
#> Single-authored docs 12
#> Documents per Author 0.275
#> Co-Authors per Doc 3.79
#> International co-authorships % 40.83
#>
#>
#> Annual Scientific Production
#>
#> Year Articles
#> 2022 120
#>
#> Annual Percentage Growth Rate 0
#>
#>
#> Most Productive Authors
#>
#> Authors Articles Authors Articles Fractionalized
#> 1 ALHAMZAH ALNOOR 2 VIJAY PEREIRA 1.5
#> 2 B. B. ZAIDAN 2 ANTON PEEZ 1.0
#> 3 BOJAN LALIC 2 ARAS BOZKURT 1.0
#> 4 CARLOS FRANCISCO SIMÕES GOMES 2 ATIK KULAKLI 1.0
#> 5 DANIJELA CIRIC 2 DIEUDONNÉ TCHUENTE 1.0
#> 6 IGOR PINHEIRO DE ARAÚJO COSTA 2 EVANDRO EDUARDO BRODAY 1.0
#> 7 KANWALJEET GARG 2 JULIAN D. CORTES 1.0
#> 8 MARCOS DOS SANTOS 2 MARCO SCHIRONE 1.0
#> 9 MATTI TEDRE 2 METEHAN FERIDUN SORKUN 1.0
#> 10 MAYARA LUSTOSA DE OLIVEIRA BARBOSA 2 NEERAJ CHUGH 1.0
#>
#>
#> Top manuscripts per citations
#>
#> Paper DOI TC TCperYear NTC
#> 1 YONG QIN, 2022, RENEWABLE & SUSTAINABLE ENERGY REVIEWS 7 7 6.72
#> 2 DIEGO A. ESQUIVEL-HERNÁNDEZ, 2022, JOURNAL OF ENVIRONMENTAL MANAGEMENT 6 6 5.76
#> 3 PAOLO BIANCONE, 2022, BRITISH FOOD JOURNAL 6 6 5.76
#> 4 SANDIP MUKHOPADHYAY, 2022, JOURNAL OF HOSPITALITY AND TOURISM INSIGHTS 6 6 5.76
#> 5 GUSTAVO FÜHR HARTMANN, 2022, ENVIRONMENTAL POLLUTION 5 5 4.80
#> 6 KANWALJEET GARG, 2022, WORLD NEUROSURGERY 5 5 4.80
#> 7 GIANVITO SCARINGI, 2022, GEOMORPHOLOGY 5 5 4.80
#> 8 CHRISTOPHER MARTIN MIKKELSEN COX, 2022, INFANCY 4 4 3.84
#> 9 DOMINIK FRANJO DOMINKOVIĆ, 2022, RENEWABLE & SUSTAINABLE ENERGY REVIEWS 4 4 3.84
#> 10 JING WANG, 2022, TECHNOLOGY ANALYSIS & STRATEGIC MANAGEMENT 4 4 3.84
#>
#>
#> Corresponding Author's Countries
#>
#> Country Articles Freq SCP MCP MCP_Ratio
#> 1 CHINA 10 0.1205 6 4 0.400
#> 2 INDIA 10 0.1205 7 3 0.300
#> 3 BRAZIL 6 0.0723 5 1 0.167
#> 4 ITALY 6 0.0723 2 4 0.667
#> 5 MALAYSIA 5 0.0602 0 5 1.000
#> 6 SOUTH AFRICA 5 0.0602 2 3 0.600
#> 7 AUSTRALIA 3 0.0361 1 2 0.667
#> 8 COLOMBIA 3 0.0361 3 0 0.000
#> 9 USA 3 0.0361 2 1 0.333
#> 10 CANADA 2 0.0241 1 1 0.500
#>
#>
#> SCP: Single Country Publications
#>
#> MCP: Multiple Country Publications
#>
#>
#> Total Citations per Country
#>
#> Country Total Citations Average Article Citations
#> 1 INDIA 20 2.000
#> 2 CHINA 15 1.500
#> 3 BRAZIL 10 1.667
#> 4 MALAYSIA 8 1.600
#> 5 ITALY 6 1.000
#> 6 MEXICO 6 6.000
#> 7 CZECH REPUBLIC 5 5.000
#> 8 AUSTRALIA 4 1.333
#> 9 DENMARK 4 4.000
#> 10 USA 4 1.333
#>
#>
#> Most Relevant Sources
#>
#> Sources Articles
#> 1 IEEE ACCESS 5
#> 2 ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH 3
#> 3 SUSTAINABILITY 3
#> 4 FRONTIERS IN PUBLIC HEALTH 2
#> 5 IFIP ADVANCES IN INFORMATION AND COMMUNICATION TECHNOLOGY 2
#> 6 LANDSCAPE ECOLOGY 2
#> 7 LECTURE NOTES IN INFORMATION SYSTEMS AND ORGANISATION 2
#> 8 LECTURE NOTES IN NETWORKS AND SYSTEMS 2
#> 9 NUCLEATION AND ATMOSPHERIC AEROSOLS 2
#> 10 PROCEDIA COMPUTER SCIENCE 2Created on 2022-09-21 with reprex v2.0.2
trangdata
commented
2 years ago @massimoaria that is completely my fault!!! I pulled the changes on openalexR but hadn't rebuild the package locally! I got the same result as you do now. Please feel free to close the issue.
I'm not sure if the rownames are needed for downstream analyses of bibliometrix, but perhaps we should remove (also, the SR column already has this information). What do you think @massimoaria?
Created on 2022-09-10 with reprex v2.0.2